BAC Information

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BAC

Clone NameB6Ng01-162M17
ChromosomeY (Build37)8 (Build37)
Map Location 1,120,579 - 1,121,02784,327,946 - 84,329,031
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneZfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y, Tspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278
Downstream geneEG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-162M17.bB6Ng01-162M17.g
ACCDH955541DH955542
length9141,087
definitionDH955541|Mus musculus domesticus DNA, BAC clone: B6Ng01-162M17, 5' end.DH955542|Mus musculus domesticus DNA, BAC clone: B6Ng01-162M17, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(1,120,579 - 1,121,027)(84,327,946 - 84,329,031)
sequence
gaattctctgattagctttgtaccccatttttatttatttttttccattt
tttattaggtatttagtgcatttacatttccaatgctataccaaaagtcc
cccatacccacccacccccactcccctacccacccactccccctttttgg
ccctggcgttcccctgtactggggcatataaaatttgcgtgtccaatggg
cctctctgtccagtgatggccgactaggccatcttttgatacatatgcag
ctagagtcaagagctccggggtactggttagttcataatgttgttccacc
tatagggttgcagatccctttagctccttgggtactttctctagctcctc
cattgggagccctgtgatccatccattagctgactgtgatcatcgacttc
tgtgtttgctaggccccggcatagtctcacaagagacagctacatctggg
tcctttcgataaaatcttgctagtgtaccccatttttaaattgggttgtt
tggattgtttgtgtctagcttcttggtttatttatacattttagatatta
gacctctgttgggagtacagtttgtgaaaatcctttcccaatctgtaggc
tgctgttttgccctattgacccttgtcctttgccttacagagactttttc
agtttcaagaggtctcatttatcaactgtttgatctaaaagcctgagata
ttggtgttctattcaggaaactgtctcttgtacaaacatgttcagggcta
tttaccattttctttttttagatttattcaatctggtattatgttctttt
gatctacttggacttgaggtttatgtagggtgatagatatgaatcaattt
cattcttctacatgcagacattcagtagaccagcaccatttattgaattg
ttttcttttttttt
gaattcatctgaacaagaagatttggaattatggaagatagaacaacaat
caaaagaaaatcttaaattgtgtttacatatttacctatatttccaaatt
aggaaactgaaatgagaggcttcattaaaatgatctaggcttataggctt
attttatgtgttattgtgttgctttctatgtggcataatggaaatccact
tcagaccatactaatgtttatggattctggttaaactatacgtgaaatat
ggtttacaggccagttatccatttataagctctttaaaacatttgtttat
ttgtttagttacttatttgtatgtgtgtgggcatgtgcataccatgccgt
gcatgtggaggacagaggacaaaccataggcattggttttcttcttatga
catgcaggtcccagggatagatcgtgggtcatctgggttgtataccagtg
cattacctactgagctatctcactttccccggttgcctacaggcttaagg
atgttctgttgcttctcaggttgctgtgaactggctgagtgagcagttat
atttgcattcatgggtttggacaagctgctgactagactggaacctgatg
ccctaggataactcactcatgtgctcagatcctcaaccaagatggttgcc
ataactgtgacattggagctgactgctttatcagtctttcatctgagctc
atccaatgatgctgtaagtcttctgagggggcaaagatgaaaccaagagt
ggctcttaaactagaggatcagaagctattgcatatcactgccatggctt
tctacccatcacagcacagatttacaaagtggaaaattagaccccaccct
tatatgaagaagcttcaaagaacttccaaaacatctgaccaaacacataa
acacaaatgagaggatccaggatgttggatgatggatgggtttgtagacc
cttttctttcagcagagatttgtacttacaaacagatgggcagctagagg
tcatgggcttagttgcttagagtgtattattcagcttaggaacaggagct
ggaacatgctattgccttgccttattaaaacatgcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1120579_1121027
seq2: B6Ng01-162M17.b_71_520

seq1  TTTTTAATT-TTTTTTTCCATTTTTTATTAGGTATTTAACTCATTTACAT  49
      |||||| || ||||||||||||||||||||||||||||   |||||||||
seq2  TTTTTATTTATTTTTTTCCATTTTTTATTAGGTATTTAGTGCATTTACAT  50

seq1  TTCCAATGCTATACCAAAAGTCCCCCATATCCACCCACCCCCACTCCCCT  99
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TTCCAATGCTATACCAAAAGTCCCCCATACCCACCCACCCCCACTCCCCT  100

seq1  GCCCACCCACTCCCCCTTTTTGGCCCTGGTATTCCCCTGTACTGGGGCAT  149
       ||||||||||||||||||||||||||||  |||||||||||||||||||
seq2  ACCCACCCACTCCCCCTTTTTGGCCCTGGCGTTCCCCTGTACTGGGGCAT  150

seq1  ATAAAGTTTGCAAGTCCAATGGGCCTCTCTTTCCAGTGATGGCCGACTAG  199
      ||||| |||||  ||||||||||||||||| |||||||||||||||||||
seq2  ATAAAATTTGCGTGTCCAATGGGCCTCTCTGTCCAGTGATGGCCGACTAG  200

seq1  GCCATCTTTTGATATATATGCAGCTAGAGTCAAGAGCTCCGGGGTACTGG  249
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GCCATCTTTTGATACATATGCAGCTAGAGTCAAGAGCTCCGGGGTACTGG  250

seq1  TTAGCTCATAACGTTGTTCCACCTATAGGGTTGGAGATCCCTTTAGCTCC  299
      |||| |||||| ||||||||||||||||||||| ||||||||||||||||
seq2  TTAGTTCATAATGTTGTTCCACCTATAGGGTTGCAGATCCCTTTAGCTCC  300

seq1  TTGGCTACTTTCTCTAGCTCCTCCATTGGGAGCCCTATGATCCATCCATT  349
      |||| ||||||||||||||||||||||||||||||| |||||||||||||
seq2  TTGGGTACTTTCTCTAGCTCCTCCATTGGGAGCCCTGTGATCCATCCATT  350

seq1  AGCTGACTGTGAGCATCCACTTCTGTGTTTGCTGGGCCCCGGCATAGTCT  399
      |||||||||||| |||| ||||||||||||||| ||||||||||||||||
seq2  AGCTGACTGTGATCATCGACTTCTGTGTTTGCTAGGCCCCGGCATAGTCT  400

seq1  CACAAGAGACAGCTACATCTGCCTCCTTTCAATAAAATCTTGCTAGTGTA  449
      |||||||||||||||||||||  ||||||| |||||||||||||||||||
seq2  CACAAGAGACAGCTACATCTGGGTCCTTTCGATAAAATCTTGCTAGTGTA  450

seq1: chr8_84327946_84329031
seq2: B6Ng01-162M17.g_70_1156 (reverse)

seq1  ATGCATGTGTTTATGTAGGCAAG--CATAGCATTGTCACAGCTCCTGTTC  48
      |||||||| ||||   |||||||   |||||| |||  ||||||||||||
seq2  ATGCATGT-TTTAATAAGGCAAGGCAATAGCA-TGTTCCAGCTCCTGTTC  48

seq1  CTTAGGCTGAATAAT-TACTCTAAGC-ACTAAGCCCATGACCTCTAGCTG  96
      | || ||||||||||  ||||||||| |||||||||||||||||||||||
seq2  C-TAAGCTGAATAATACACTCTAAGCAACTAAGCCCATGACCTCTAGCTG  97

seq1  CCCATCTGTTTGTAAGTAC-AATCTCTGCTGAAAGAAAAGGGTCTAC-AA  144
      ||||||||||||||||||| ||||||||||||||||||||||||||| ||
seq2  CCCATCTGTTTGTAAGTACAAATCTCTGCTGAAAGAAAAGGGTCTACAAA  147

seq1  CCCATCCATCATCCAACATCCTGGATCCTCTCATTTGTGTTTATGTGTTT  194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCCATCATCCAACATCCTGGATCCTCTCATTTGTGTTTATGTGTTT  197

seq1  GGTCAGATGTTTTTGGAAGTTCTTTGAAGCTTCTTTCATATAAGGGTGGG  244
      ||||||||| ||||||||||||||||||||||| ||||||||||||||||
seq2  GGTCAGATG-TTTTGGAAGTTCTTTGAAGCTTC-TTCATATAAGGGTGGG  245

seq1  GTCTAATTTTCCACTTTGTAAATCTGTGCTGTGATGGGTAGAAAGCCATG  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAATTTTCCACTTTGTAAATCTGTGCTGTGATGGGTAGAAAGCCATG  295

seq1  GCAGTGATATGCAATAGCTTCTGATCCTCTAGTTTAAGAGCCACTCTTGG  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGATATGCAATAGCTTCTGATCCTCTAGTTTAAGAGCCACTCTTGG  345

seq1  TTTCATCTTTGCCCCCTCAGAAGACTTACAGCATCATTGGATGAGCTCAG  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATCTTTGCCCCCTCAGAAGACTTACAGCATCATTGGATGAGCTCAG  395

seq1  ATGAAAGACTGATAAAGCAGTCAGCTCCAATGTCACAGTTATGGCAACCA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAGACTGATAAAGCAGTCAGCTCCAATGTCACAGTTATGGCAACCA  445

seq1  TCTTGGTTGAGGATCTGAGCACATGAGTGAGTTATCCTAGGGCATCAGGT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGTTGAGGATCTGAGCACATGAGTGAGTTATCCTAGGGCATCAGGT  495

seq1  TCCAGTCTAGTCAGCAGCTTGTCCAAACCCATGAATGCAAATATAACTGC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTCTAGTCAGCAGCTTGTCCAAACCCATGAATGCAAATATAACTGC  545

seq1  TCACTCAGCCAGTTCACAGCAACCTGAGAAGCAACAGAACATCCTTAAGC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTCAGCCAGTTCACAGCAACCTGAGAAGCAACAGAACATCCTTAAGC  595

seq1  CTGTAGGCAACCGGGGAAAGTGAGATAGCTCAGTAGGTAATGCACTGGTA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGGCAACCGGGGAAAGTGAGATAGCTCAGTAGGTAATGCACTGGTA  645

seq1  TACAACCCAGATGACCCACGATCTATCCCTGGGACCTGCATGTCATAAGA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAACCCAGATGACCCACGATCTATCCCTGGGACCTGCATGTCATAAGA  695

seq1  AGAAAACCAATGCCTATGGTTTGTCCTCTGTCCTCCACATGCACGGCATG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAACCAATGCCTATGGTTTGTCCTCTGTCCTCCACATGCACGGCATG  745

seq1  GTATGCACATGCCCACACACATACAAATAAGTAACTAAACAAATAAACAA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGCACATGCCCACACACATACAAATAAGTAACTAAACAAATAAACAA  795

seq1  ATGTTTTAAAGAGCTTATAAATGGATAACTGGCCTGTAAACCATATTTCA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTTAAAGAGCTTATAAATGGATAACTGGCCTGTAAACCATATTTCA  845

seq1  CGTATAGTTTAACCAGAATCCATAAACATTAGTATGGTCTGAAGTGGATT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTATAGTTTAACCAGAATCCATAAACATTAGTATGGTCTGAAGTGGATT  895

seq1  TCCATTATGCCACATAGAAAGCAACACAATAACACATAAAATAAGCCTAT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTATGCCACATAGAAAGCAACACAATAACACATAAAATAAGCCTAT  945

seq1  AAGCCTAGATCATTTTAATGAAGCCTCTCATTTCAGTTTCCTAATTTGGA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTAGATCATTTTAATGAAGCCTCTCATTTCAGTTTCCTAATTTGGA  995

seq1  AATATAGGTAAATATGTAAACACAATTTAAGATTTTCTTTTGATTGTTGT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAGGTAAATATGTAAACACAATTTAAGATTTTCTTTTGATTGTTGT  1045

seq1  TCTATCTTCCATAATTCCAAATCTTCTTGTTCAGATGAATTC  1086
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCTTCCATAATTCCAAATCTTCTTGTTCAGATGAATTC  1087