BAC Information

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BAC

Clone NameB6Ng01-162P21
ChromosomeY (Build37)16 (Build37)
Map Location 1,120,598 - 1,120,80863,154,944 - 63,155,881
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneZfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y, Tspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278
Downstream geneEG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-162P21.bB6Ng01-162P21.g
ACCDH955689DH955690
length955940
definitionDH955689|Mus musculus domesticus DNA, BAC clone: B6Ng01-162P21, 5' end.DH955690|Mus musculus domesticus DNA, BAC clone: B6Ng01-162P21, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(1,120,598 - 1,120,808)(63,154,944 - 63,155,881)
sequence
gaattcagtcctactctaatatttagacacaggcagaacatagccaaatc
ctttgttacactatggcctcttttgaatggatggcctctattgaattccc
aaatgggttagtgtagtgttctaaatatatagtctttcttatgaatatag
tctttcttatgagggttcaacttgtggaactcttaccagaatggcccagt
aaggtttccttacaacattacaagacttcgattatcaacatcttcagact
ttcaaagtttcaaagtacacattatcaggtttctttttttttattacata
ttttcctcaattacatttccaatgccatcccaaaagtcccccatactctc
ccccccacttccctacccactcattcccatttttttttttggccctggtg
ttcccctgttctggggcatatacagtttgcgtgtccaatgtgcctctctt
tccagtgatggccgactaggccatcttttgatacatatgcagctagagtc
aagagctccggggtactggttagttcataatgttgttccacctatagggt
tgcagatccctttagctccttgggtactttctctagctcctccattggga
gccctgtgatccatccaatagctgactgtgaacatccacttctgtgtttg
ctagaccccagcatagtctcacaagagacagctacatctgggtcctttcg
ataaaatcttgctagtgtatgcaatggtgtgagcatttggaagctgatta
tggggtggatccctagatatggcagtctctagatggtccatcctttcgtc
tcagctccaaacttttgtctctgtaactccttccatgggtgttttgttcc
caattctaaaggaggggcatagtgtccacacttcagtcttcattcttctt
gagtttcatgtgtttagcaaattgtatcttatatcttgggaatcctaggt
ttggg
gaattcactatgccgtcttgattgctttcccacaatgctgcccccatggc
tcccatccagcaattgttgtggcaggagcaagagtgtggttggctgcatg
gtgggttgcccataccgcaccagggcgagcaacctgagaagaggaaggcc
aatcaagaagggaatagttctcattatttcagtagtcaaaggcacaattt
caggtggggagctttattataaagatatgatagctttgactcactatacc
caacattaaggaagcaagggtaagcatttttatgatcatttccttgcaaa
ctagaatttaggatgcagttatttctccctcgtggaggccacagggaaca
ccttaaagaagtttttggcctcaagcccagtatgtaatgtaggacagaaa
tattttccagaactgaggccatttggtggtcactaaagcaacacttgaaa
attatcttgatgtgtagttgaaaatgccagagaaggtaggacttatttgc
ccagaataatgggccattattcacacactcagacatgttgtaaagggttc
gggctcagcaggaactaggaatgtctctgaagaaaagggacagattgatt
tgagtaacaaattctatactcactgttttggggactttgattgtttttaa
tatatctggcatcagttttgagtatcttatatatgcaaagtaataaagtg
aatggggattcactgtccttagaaatttttaatttttgttataaaattag
tgtcctttttattcctctgctgaatgaagtcaagagtcttgatttgttgc
tttatgataggaaatttattgttgatacaaaaaaaaatgttaagtgctga
ccattaattcagctctctctctctctctctctctctctctctctctttct
ctctctctctgtgtgtgtgtgtgcgtgtgtgtgcgtgtga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1120598_1120808
seq2: B6Ng01-162P21.b_335_548

seq1  TTTTTTATTAGGTATTTAACTCATTTACATTTCCAATGCTATACCAAAAG  50
      ||||||||||  |||||  |||| ||||||||||||||| || |||||||
seq2  TTTTTTATTACATATTTTCCTCAATTACATTTCCAATGCCATCCCAAAAG  50

seq1  TCCCCCATATCCACCCACCCCCACTCCCCTGCCCACCCACTCCC-----C  95
      |||||||||  | | | |||||||| |||| ||||| || ||||      
seq2  TCCCCCATA--CTCTCCCCCCCACTTCCCTACCCACTCATTCCCATTTTT  98

seq1  CTTTTTGGCCCTGGTATTCCCCTGTACTGGGGCATATAAAGTTTGCAAGT  145
       |||||||||||||| ||||||||| |||||||||||| |||||||  ||
seq2  TTTTTTGGCCCTGGTGTTCCCCTGTTCTGGGGCATATACAGTTTGCGTGT  148

seq1  CCAATGGGCCTCTCTTTCCAGTGATGGCCGACTAGGCCATCTTTTGATAT  195
      |||||| |||||||||||||||||||||||||||||||||||||||||| 
seq2  CCAATGTGCCTCTCTTTCCAGTGATGGCCGACTAGGCCATCTTTTGATAC  198

seq1  ATATGCAGCTAGAGTC  211
      ||||||||||||||||
seq2  ATATGCAGCTAGAGTC  214

seq1: chr16_63154944_63155881
seq2: B6Ng01-162P21.g_69_1007

seq1  GAATTCACTATGCCGTCTTGATTGCTTTCCCACAATGCTGCCCCCATGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTATGCCGTCTTGATTGCTTTCCCACAATGCTGCCCCCATGGC  50

seq1  TCCCATCCAGCAATTGTTGTGGCAGGAGCAAGAGTGTGGTTGGCTGCATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATCCAGCAATTGTTGTGGCAGGAGCAAGAGTGTGGTTGGCTGCATG  100

seq1  GTGGGTTGCCCATACCGCACCAGGGCGAGCAACCTGAGAAGAGGAAGGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGTTGCCCATACCGCACCAGGGCGAGCAACCTGAGAAGAGGAAGGCC  150

seq1  AATCAAGAAGGGAATAGTTCTCATTATTTCAGTAGTCAAAGGCACAATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAGAAGGGAATAGTTCTCATTATTTCAGTAGTCAAAGGCACAATTT  200

seq1  CAGGTGGGGAGCTTTATTATAAAGATATGATAGCTTTGACTCACTATACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGGGGAGCTTTATTATAAAGATATGATAGCTTTGACTCACTATACC  250

seq1  CAACATTAAGGAAGCAAGGGTAAGCATTTTTATGATCATTTCCTTGCAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATTAAGGAAGCAAGGGTAAGCATTTTTATGATCATTTCCTTGCAAA  300

seq1  CTAGAATTTAGGATGCAGTTATTTCTCCCTCGTGGAGGCCACAGGGAACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAATTTAGGATGCAGTTATTTCTCCCTCGTGGAGGCCACAGGGAACA  350

seq1  CCTTAAAGAAGTTTTTGGCCTCAAGCCCAGTATGTAATGTAGGACAGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAAAGAAGTTTTTGGCCTCAAGCCCAGTATGTAATGTAGGACAGAAA  400

seq1  TATTTTCCAGAACTGAGGCCATTTGGTGGTCACTAAAGCAACACTTGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCCAGAACTGAGGCCATTTGGTGGTCACTAAAGCAACACTTGAAA  450

seq1  ATTATCTTGATGTGTAGTTGAAAATGCCAGAGAAGGTAGGACTTATTTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCTTGATGTGTAGTTGAAAATGCCAGAGAAGGTAGGACTTATTTGC  500

seq1  CCAGAATAATGGGCCATTATTCACACACTCAGACATGTTGTAAAGGGTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAATAATGGGCCATTATTCACACACTCAGACATGTTGTAAAGGGTTC  550

seq1  GGGCTCAGCAGGAACTAGGAATGTCTCTGAAGAAAAGGGACAGATTGATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTCAGCAGGAACTAGGAATGTCTCTGAAGAAAAGGGACAGATTGATT  600

seq1  TGAGTAACAAATTCTATACTCACTGTTTTGGGGACTTTGATTGTTTTTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTAACAAATTCTATACTCACTGTTTTGGGGACTTTGATTGTTTTTAA  650

seq1  TATATCTGGCATCAGTTTTGAGTATCTTATATATGCAAAGTAATAAAGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCTGGCATCAGTTTTGAGTATCTTATATATGCAAAGTAATAAAGTG  700

seq1  AATGGGGATTCACTGTCCTTAGAAATTTTTAATTTTTGTTATAAAATTAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGGATTCACTGTCCTTAGAAATTTTTAATTTTTGTTATAAAATTAG  750

seq1  TGTCCTTTTTATTCCTCTGCTGAATGAAGTCAAGAGTCTTGATTTGTTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTTTTTATTCCTCTGCTGAATGAAGTCAAGAGTCTTGATTTGTTGC  800

seq1  TTTATGATAGGAAATTTATTGTTGATAC-AAAAAAAATGTTAAGTGCTGA  849
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TTTATGATAGGAAATTTATTGTTGATACAAAAAAAAATGTTAAGTGCTGA  850

seq1  CCATTAATTCAGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTAATTCAGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCT  900

seq1  CTCTCTCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  938
      ||||||||||||||||||||||| ||||||||| |||||
seq2  CTCTCTCTCTGTGTGTGTGTGTGCGTGTGTGTGCGTGTG  939