BAC Information

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BAC

Clone NameB6Ng01-163D22
Chromosome4 (Build37)Y (Build37)
Map Location 113,717,644 - 113,718,858573,322 - 573,525
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC230622, LOC100040607, LOC242627
Downstream geneLOC100040625, A630098G03Rik, LOC666048, Foxd2, LOC100040736, Foxe3, Cmpk, Stil
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-163D22.bB6Ng01-163D22.g
ACCDH955881DH955882
length1,172336
definitionDH955881|Mus musculus domesticus DNA, BAC clone: B6Ng01-163D22, 5' end.DH955882|Mus musculus domesticus DNA, BAC clone: B6Ng01-163D22, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(113,717,644 - 113,718,858)(573,322 - 573,525)
sequence
gaattccaagctcacagtgggcttcaaggattttctaggaccttggaaca
ctggtggaggtttacctatgtcaaaaataaatctttaaaggtacttataa
taaaacaatactgaaagagggcatacaccagactaacacggggacagggt
ttgagtatatgggctatgggaatgccaaggttcaaggagacatagtttcc
ttgaatctctttgcctcatgagtgcttccaggcctcagcctgtcaagcag
atatcgatggagtggaaatagcatattggtcacccctgaaccagcataac
tccatatactctaagtgtgtcatagagacacctaacagttgatgtcaggc
tcaccttttaatctactcacaaagaatgcagtgcaagtagtcaccatcag
attatctctaccaaaatataaaaataaaaataaatctgaaactatcacga
ctttgctgccataaactgcttagaagaacatatcaaatcctacccacaag
gactagataacatacatattgaactcattatatttcctttaattttccct
tatttttaaatccagtgctagctcaatttttttaatctttaaaatagatt
ctattgaagtaggaagccccaaaaacctctcttgattttctacatatttg
aaatagaaaaattagagttcttcactccatcccttaagcctctaccagaa
tagaaagccatcaccatataattgtttttcttctgccatatcccctggaa
tttaatacaccaaattactcatggatcagaatgatgggtttcacaaaaac
ctaaaatacctcctcttttttcatcctcataaattttagcgttatttaaa
attttacaatttttgggtcattaagtaattgaaaaatgacattttggacc
ttaaatccatgattatttcatgtttgcaggtcacttttgctcatcttgta
aactattaggtattcactttgagctttcattctggaaaccacatataaaa
tctatttactgaagtttctgggaattagatctagctatgcatgcagaaac
ttattgagttcatgttacatagctgatatatacctttagtttcttgtacc
agaagaaatttcactaagcaagcttttttttttctggataaagtccgaac
cttaatacctggaaatggtact
gaattctcatttcagttttgactatcagaaaaggacctaatagcagtccc
actataaaagagcttaataattacagatataattatagaagttcttatag
gatcatcattaagacttaagaagtcatctaggccctggctttcccctgta
ctggggcatataaagtttgcaataccaaggggcctctcttcccagtgatg
gctgactaggccatcttctgctacatatacagctagagatatgagctctg
gggggtactgggtagttcatattgttgttccacctatagggttgcagacc
ccttcagctccttgggtgctttctctagcttctcca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_113717644_113718858
seq2: B6Ng01-163D22.b_50_1221

seq1  GAATTCCAAGCTCACAGTGGGCTTCAAGGATTTTCTAGGACCTTGGAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGCTCACAGTGGGCTTCAAGGATTTTCTAGGACCTTGGAACA  50

seq1  CTGGTGGAGGTTTACCTATGTCAAAAATAAATCTTTAAAGGTACTTATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGGAGGTTTACCTATGTCAAAAATAAATCTTTAAAGGTACTTATAA  100

seq1  TAAAACAATACTGAAAGAGGGCATACACCAGACTAACACGGGGACAGGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACAATACTGAAAGAGGGCATACACCAGACTAACACGGGGACAGGGT  150

seq1  TTGAGTATATGGGCTATGGGAATGCCAAGGTTCAAGGAGACATAGTTTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTATATGGGCTATGGGAATGCCAAGGTTCAAGGAGACATAGTTTCC  200

seq1  TTGAATCTCTTTGCCTCATGAGTGCTTCCAGGCCTCAGCCTGTCAAGCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATCTCTTTGCCTCATGAGTGCTTCCAGGCCTCAGCCTGTCAAGCAG  250

seq1  ATATCGATGGAGTGGAAATAGCATATTGGTCACCCCTGAACCAGCATAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCGATGGAGTGGAAATAGCATATTGGTCACCCCTGAACCAGCATAAC  300

seq1  TCCATATACTCTAAGTGTGTCATAGAGACACCTAACAGTTGATGTCAGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATATACTCTAAGTGTGTCATAGAGACACCTAACAGTTGATGTCAGGC  350

seq1  TCACCTTTTAATCTACTCACAAAGAATGCAGTGCAAGTAGTCACCATCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTTTTAATCTACTCACAAAGAATGCAGTGCAAGTAGTCACCATCAG  400

seq1  ATTATCTCTACCAAAATATAAAAATAAAAATAAATCTGAAACTATCACGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCTCTACCAAAATATAAAAATAAAAATAAATCTGAAACTATCACGA  450

seq1  CTTTGCTGCCATAAACTGCTTAGAAGAACATATCAAATCCTACCCACAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCTGCCATAAACTGCTTAGAAGAACATATCAAATCCTACCCACAAG  500

seq1  GACTAGATAACATACATATTGAACTCATTATATTTCCTTTAATTTTCCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAGATAACATACATATTGAACTCATTATATTTCCTTTAATTTTCCCT  550

seq1  TATTTTTAAATCCAGTGCTAGCTCAATTTTTTTAATCTTTAAAATAGATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTAAATCCAGTGCTAGCTCAATTTTTTTAATCTTTAAAATAGATT  600

seq1  CTATTGAAGTAGGAAGCCCCAAAAACCTCTCTTGATTTTCTACATATTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTGAAGTAGGAAGCCCCAAAAACCTCTCTTGATTTTCTACATATTTG  650

seq1  AAATAGAAAAATTAGAGTTCTTCACTCCATCCCTTAAGCCTCTACCAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGAAAAATTAGAGTTCTTCACTCCATCCCTTAAGCCTCTACCAGAA  700

seq1  TAGAAAGCCATCACCATATAATTGTTTTTCTTCTGCCATATCCCCTGGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAGCCATCACCATATAATTGTTTTTCTTCTGCCATATCCCCTGGAA  750

seq1  TTTAATACACCAAATTACTCATGGATCAGAATGATGGGTTTCACAAAAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATACACCAAATTACTCATGGATCAGAATGATGGGTTTCACAAAAAC  800

seq1  CTAAAATACCTCCTC-TTTTTCATCCTCATAAATTTTAGCGTTATTTAAA  849
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CTAAAATACCTCCTCTTTTTTCATCCTCATAAATTTTAGCGTTATTTAAA  850

seq1  ATTTTACAATTTTTGGGTCATTAAGTAATTGAAAAATGACATTTTGGACC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTACAATTTTTGGGTCATTAAGTAATTGAAAAATGACATTTTGGACC  900

seq1  TTAAATCCATGATTATTTCATGTTTGCAGGTCACTTTTGCTCATCTTGTA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATCCATGATTATTTCATGTTTGCAGGTCACTTTTGCTCATCTTGTA  950

seq1  AACTATTAGGTATTCACTTTGAGCTTTCAATTCTGGAAACCACATAATAA  999
      |||||||||||||||||||||||||||| |||||||||||||||| ||||
seq2  AACTATTAGGTATTCACTTTGAGCTTTC-ATTCTGGAAACCACAT-ATAA  998

seq1  AATCTAATTTAACTGAAGTTTCTGGGAATTAGGATCTAAGCTATGCATGC  1049
      ||||||  || |||||||||||||||||||| ||||| ||||||||||||
seq2  AATCTA--TTTACTGAAGTTTCTGGGAATTA-GATCT-AGCTATGCATGC  1044

seq1  AGAAACTTTATTGAGTTCATG-TACATAGCTTGATATATA-CTTTAG-TT  1096
      |||||| |||||||||||||| |||||||| ||||||||| |||||| ||
seq2  AGAAAC-TTATTGAGTTCATGTTACATAGC-TGATATATACCTTTAGTTT  1092

seq1  CTTGTACCAGAAGAAATTTCACTAAAGCAGGGTTTTTTTTTTCTTGATAA  1146
      ||||||||||||||||||||||| ||||| | |||||||||||| |||||
seq2  CTTGTACCAGAAGAAATTTCACT-AAGCAAGCTTTTTTTTTTCTGGATAA  1141

seq1  AATTCCCAGAACCCTATTACCTGAGAAATAGTAACTACTAATTCTCACAG  1196
      | |   | ||||| || |||||| ||||| || |||              
seq2  AGT---CCGAACCTTAATACCTG-GAAATGGT-ACT--------------  1172

seq1  CCATTTGGAGAATGGTACT  1215
                         
seq2  -------------------  1172

seq1: chrY_573322_573525
seq2: B6Ng01-163D22.g_198_403 (reverse)

seq1  TGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAAACCTA  50
      ||||| |||||||||||| |||||||||||| ||||| ||||||| ||||
seq2  TGGAGAAGCTAGAGAAAGCACCCAAGGAGCTGAAGGGGTCTGCAACCCTA  50

seq1  TAGATGGAACAACAATATGAA-TAACCAGTA-TCCACAGAGCTCATGTCT  98
      ||| ||||||||||||||||| || ||||||  || |||||||||| |||
seq2  TAGGTGGAACAACAATATGAACTACCCAGTACCCCCCAGAGCTCATATCT  100

seq1  CTAGCTGCATATGTATCAGAAGATGGCCTAGTTGGCCATCATTGGGAAGA  148
      ||||||| ||||||| ||||||||||||||||  ||||||| ||||||||
seq2  CTAGCTGTATATGTAGCAGAAGATGGCCTAGTCAGCCATCACTGGGAAGA  150

seq1  GAGGCCCCTTGGTCTTGCAAACTTTATATGCCCCAGTACAGGGGAACACC  198
      ||||||||||||| ||||||||||||||||||||||||||||||||  ||
seq2  GAGGCCCCTTGGTATTGCAAACTTTATATGCCCCAGTACAGGGGAAAGCC  200

seq1  AGGGCC  204
      ||||||
seq2  AGGGCC  206