BAC Information

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BAC

Clone NameB6Ng01-163L23
ChromosomeY (Build37)17 (Build37)
Map Location 1,870,346 - 1,870,41138,783,796 - 38,784,801
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210
Downstream geneUbe1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236, EG631479, LOC667244, LOC100039652
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-163L23.bB6Ng01-163L23.g
ACCDH956256DH956257
length4571,065
definitionDH956256|Mus musculus domesticus DNA, BAC clone: B6Ng01-163L23, 5' end.DH956257|Mus musculus domesticus DNA, BAC clone: B6Ng01-163L23, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(1,870,346 - 1,870,411)(38,783,796 - 38,784,801)
sequence
gaattcttatatgatcatcatagataattaagaagtcatttattataccc
aaaatacaatttgcaaaacacatgaaattcaagaagaaggaagaccaaag
tgtggatatttcgttccttcttagaagggggaacaaaatacccatggaag
tagttacatagacaatgttcagagctgagatggaaggaaggaccatccag
agactgccccacctgggatccatcccatatacaaccactaaatacagaca
ctattgcatatgccagcaaaattctgctgataggaccctgatatagctct
ctcttttgagactatgccagtgcctggcaaatacagaagtgggtgctcac
agtcatctattggatggaacacagggcccctaatgaaggagctagagaaa
gtacccaaggagctaaaggggtctgcaaccctataggaggaacaataaga
tgaacta
gaattctgtttaagtatatattctgatagcctctgtctttttattgtgga
tttgagtccattaatgttaacagacattaattttgaaagattattaattt
catttactttgatgctgtttgtggaattgtgtgtatttgtgtgtgtctgt
gcaagggttcaagttctatttgtttcagtagtgtaaaattatttatttct
tgtacttacttaattgtaactagactagttttgatggtgatttccataaa
ggatatttgtgatactagattccattgtccttggatatcttggtttctcc
ctctatggtgattgaaaattttgatggatagagtaatctagaatgatatc
tgtgctttatcagggcttttaatagtttgtcccagacccttctagctttt
cgagtctctactgagatgttgggtgtaattctgttatatctaacatttgc
tacttttcaattttatttgttaacttttgaaattccttctttatactaca
tttagggttttgataactacttgacaagagggctttattttctgttccaa
tttggtattctagagagagactatccaaatttatagacaaataaataaaa
tcagtaatgaaaagagaaccataaaattctgatacaggaatttcaaagaa
tccttagattttacttcaatcattactacagtaaattgtcaaatgttaag
aaaattgacgattttctaaacaggtaacactcatgaaacttaaatcaaga
tcacaaaaaactattacttaggcttaagttctattatttgggcttaagat
ttaattagccttatataagcagtcactaaaattctcccaaacagcaggag
ctcagggccagaagttttagtgcagagtatatcaaactttctcagatatt
tttcttcatttacatttcaaatgctatcatgaatgtcccttatacccttc
cccaaccctgctccccaacctaatcactctgcttctggccctgggcattc
ccctgaacggggaaatataattctatcaacttcagaacagctaatgaata
ggtcctcaggctatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1870346_1870411
seq2: B6Ng01-163L23.b_436_501

seq1  CTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGA  50
      ||||||||||||||||||||||||||||| |||||||||||||||| |||
seq2  CTAGAGAAAGTACCCAAGGAGCTAAAGGGGTCTGCAACCCTATAGGAGGA  50

seq1  ACAACATTATGAACTA  66
      |||| |  ||||||||
seq2  ACAATAAGATGAACTA  66

seq1: chr17_38783796_38784801
seq2: B6Ng01-163L23.g_135_1133

seq1  TTAACAGACATTAATTTTGAAAGATTATTAATTTCATTTACTTTGATGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACAGACATTAATTTTGAAAGATTATTAATTTCATTTACTTTGATGCT  50

seq1  GTTTGTGGAATTGTGTGTATTTGTGTGTGTCTGTGCAAGGGTTCAAGTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTGGAATTGTGTGTATTTGTGTGTGTCTGTGCAAGGGTTCAAGTTC  100

seq1  TATTTGTTTCAGTAGTGTAAAATTATTTATTTCTTGTACTTACTTAATTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGTTTCAGTAGTGTAAAATTATTTATTTCTTGTACTTACTTAATTG  150

seq1  TAACTAGACTAGTTTTGATGGTGATTTCCATAAAGGATATTTGTGATACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTAGACTAGTTTTGATGGTGATTTCCATAAAGGATATTTGTGATACT  200

seq1  AGATTCCATTGTCCTTGGATATCTTGGTTTCTCCCTCTATGGTGATTGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCCATTGTCCTTGGATATCTTGGTTTCTCCCTCTATGGTGATTGAA  250

seq1  AATTTTGATGGATAGAGTAATCTAGAATGATATCTGTGCTTTATCAGGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTGATGGATAGAGTAATCTAGAATGATATCTGTGCTTTATCAGGGC  300

seq1  TTTTAATAGTTTGTCCCAGACCCTTCTAGCTTTTCGAGTCTCTACTGAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATAGTTTGTCCCAGACCCTTCTAGCTTTTCGAGTCTCTACTGAGA  350

seq1  TGTTGGGTGTAATTCTGTTATATCTAACATTTGCTACTTTTCAATTTTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGGTGTAATTCTGTTATATCTAACATTTGCTACTTTTCAATTTTAT  400

seq1  TTGTTAACTTTTGAAATTCCTTCTTTATACTACATTTAGGGTTTTGATAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTAACTTTTGAAATTCCTTCTTTATACTACATTTAGGGTTTTGATAA  450

seq1  CTACTTGACAAGAGGGCTTTATTTTCTGTTCCAATTTGGTATTCTAGAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTGACAAGAGGGCTTTATTTTCTGTTCCAATTTGGTATTCTAGAGA  500

seq1  GAGACTATCCAAATTTATAGACAAATAAATAAAATCAGTAATGAAAAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTATCCAAATTTATAGACAAATAAATAAAATCAGTAATGAAAAGAG  550

seq1  AACCATAAAATTCTGATACAGGAATTTCAAAGAATCCTTAGATTTTACTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATAAAATTCTGATACAGGAATTTCAAAGAATCCTTAGATTTTACTT  600

seq1  CAATCATTACTACAGTAAATTGTCAAATGTTAAGAAAATTGACGATTTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCATTACTACAGTAAATTGTCAAATGTTAAGAAAATTGACGATTTTC  650

seq1  TAAACAGGTAACACTCATGAAACTTAAATCAAGATCACAAAAAACTATTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAGGTAACACTCATGAAACTTAAATCAAGATCACAAAAAACTATTA  700

seq1  CTTAGGCTTAAGTTCTATTATTTGGGCTTAAGATTTAATTAGCCTTATAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGGCTTAAGTTCTATTATTTGGGCTTAAGATTTAATTAGCCTTATAT  750

seq1  AAGCAGTCACTAAAATTCTCCCAAACAGCAGGAGCTCAGGGCCAGAAGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AAGCAGTCACTAAAATTCTCCCAAACAGCAGGAGCTCAGGGCCAGAA-GT  799

seq1  TTTAGTGCAGAGTTATATCAAACTTTCTCAGATA-TTTTCTTCATTTACA  849
      |||||||||||| ||||||||||||||||||||| |||||||||||||||
seq2  TTTAGTGCAGAG-TATATCAAACTTTCTCAGATATTTTTCTTCATTTACA  848

seq1  TTTCAAATGCTATCATGAATGTCCCTTATACCCTTCCCCCAACCCTGCTC  899
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TTTCAAATGCTATCATGAATGTCCCTTATACCCTT-CCCCAACCCTGCTC  897

seq1  CCCAACCTAATCACTCCTGCTTCCTGGCCCT-GGCATTCCCCTGAACGGG  948
      ||||||||||||||| |||||| |||||||| ||||||||||||||||||
seq2  CCCAACCTAATCACT-CTGCTT-CTGGCCCTGGGCATTCCCCTGAACGGG  945

seq1  GATATATAATTCTATCAAACTTTCAGAACCAGCTAACATGAATA-GTCCT  997
      || |||||||||||||||   ||||||| ||||||  ||||||| |||||
seq2  GAAATATAATTCTATCAA--CTTCAGAA-CAGCTA--ATGAATAGGTCCT  990

seq1  CAAGCTATT  1006
      || ||||||
seq2  CAGGCTATT  999