BAC Information

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BAC

Clone NameB6Ng01-165P13
Chromosome2 (Build37)Y (Build37)
Map Location 92,038,729 - 92,039,766248,291 - 248,459
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneAcp2, Ddb2, Pacsin3, Zfp289, 1110051M20Rik, Lrp4, LOC619941, Ckap5, F2, Zfp408, Arhgap1, D2Ertd391e, LOC100043179, D230010M03Rik, D030051N19Rik, Chrm4, Mdk, Dgkz, Creb3l1
Downstream genePhf21a, Gyltl1b, Pex16, 1700029I15Rik, Mapk8ip1, Cry2, Slc35c1, LOC100042775, LOC100043205, Chst1, Syt13, LOC100042784, Trp53i11, C230071H18Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-165P13.bB6Ng01-165P13.g
ACCDH957881DH957882
length1,039939
definitionDH957881|Mus musculus domesticus DNA, BAC clone: B6Ng01-165P13, 5' end.DH957882|Mus musculus domesticus DNA, BAC clone: B6Ng01-165P13, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(92,038,729 - 92,039,766)(248,291 - 248,459)
sequence
gaattcttttttgaaaaggaacagatgctgttaacttatcaggacctaat
actaaaaagcctacaaaaatctccgtgctgtttattttctttatttaatc
tatatgcagagcattttgtaattattgctgttagagggcttgaagctgct
gctgccttcccacccttgttgtgctcaggagacagattaggaatgccaat
ttcacaacttggtgtaaagaaatgatgaccactgaaataaaacagttcgg
aggaaaagcaaaccagatagaaacgtacaatgaaaatgtcttttagtaaa
atgttagcatgctgtacttggagcagatgccacattaattcaaaagagag
cccagaaaatgtggcaactttacgatgtcaatggagggagctgcaatggc
tcttgtatgcactacgtgaagttcttggcaccgcctggtcctgtcctgtc
ctgtgctgctccgccgtttcctctaggtattaagtgttaatatacaaatt
ctaaattcatgctatacattttatttgtgtaattaaatgcattattgtgc
atttaggtattagagtaaggagcccaataagttataatacagaagtaatt
tttaaaaatttagatatgtatataaaaatatttagaatctgaggcaaaaa
aattgacttttctctgcctcttccagtcactttcatcatgaacttgtcta
agaattgagtctttcaaagaagcctagtgcttttcagatgttggatttgg
gacaggttacaaaattatgagatttttgcatttatttttttctcatttaa
atttatagttatcattggacatttgttaggatttttaagtagcttagact
cattcattccctttgaggtttttttttttttctttttttttttttttatg
gtgttttggaatgaaaagggtgatagaagggtactgcacacactcagatg
attccagagtgacattcattttatggaggactgtatgggacctctcggga
atgccttgtttctgcatgaaatgactagtgtggctctga
gaattcccaacagaagaatctcaaatcgacaagaaacacttaaagtgaca
gcacatgctggcaaggatgtagagcaaagggaaaactcctccataatgaa
aacttgtacaactactttggaaatatggaagtttctcagaaaattgggaa
tggatctgcctcaaaggacacagctcaactatgttcatagcatccttatt
tgttttttgtttgtttgtttgtttggttttcgaaacagggtttctctgtg
tagccctagctgtcctggaactcactttgtagaccaggctggcctggaac
tcagaaatccgcctgcctctgcctcccgagtgctgggattaaaggcgtgt
gccaccactgcccagcacagctttatttgtaacagccagaaagtggaaac
aacctagatgtccgtcagtggaagaatggtaaagaaaatgtgatgcattt
acataatggaatgttacccagctattaaagaaaagaacatcctaacattt
gaaggcaaatggatggaactagacaatcatccagaaagacagacatggtg
tacactctcctacaagtgggtagtaactgtaaagtaaagtgcaatcatgt
ccaactcacagcaccagagaggctaagtaacaaggaggactcaacggggg
acacacggatcttcctgggaagggaaaataaaacagattttgaagatgga
ctgggggcaattggggatagaaacaggtggaatcaagtggggtatgtagg
gagagtactaggagagacacctgcaattgggggtattttgggggctgagg
agaaacctagtgcagtacaaacccccaggagtccacaagggtgactttac
taggtctttaatagatccatagtaatgggaatatggagcctgaattggcc
aacttctgaaacaggcaagggtcctagatgggattggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_92038729_92039766
seq2: B6Ng01-165P13.b_45_1083

seq1  GAATTCTTTTTTGAAAAGGAACAGATGCTGTTAACTTATCAGGACCTAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTTTGAAAAGGAACAGATGCTGTTAACTTATCAGGACCTAAT  50

seq1  ACTAAAAAGCCTACAAAAATCTCCGTGCTGTTTATTTTCTTTATTTAATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAAAAGCCTACAAAAATCTCCGTGCTGTTTATTTTCTTTATTTAATC  100

seq1  TATATGCAGAGCATTTTGTAATTATTGCTGTTAGAGGGCTTGAAGCTGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGCAGAGCATTTTGTAATTATTGCTGTTAGAGGGCTTGAAGCTGCT  150

seq1  GCTGCCTTCCCACCCTTGTTGTGCTCAGGAGACAGATTAGGAATGCCAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCTTCCCACCCTTGTTGTGCTCAGGAGACAGATTAGGAATGCCAAT  200

seq1  TTCACAACTTGGTGTAAAGAAATGATGACCACTGAAATAAAACAGTTCGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACAACTTGGTGTAAAGAAATGATGACCACTGAAATAAAACAGTTCGG  250

seq1  AGGAAAAGCAAACCAGATAGAAACGTACAATGAAAATGTCTTTTAGTAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAAGCAAACCAGATAGAAACGTACAATGAAAATGTCTTTTAGTAAA  300

seq1  ATGTTAGCATGCTGTACTTGGAGCAGATGCCACATTAATTCAAAAGAGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTAGCATGCTGTACTTGGAGCAGATGCCACATTAATTCAAAAGAGAG  350

seq1  CCCAGAAAATGTGGCAACTTTACGATGTCAATGGAGGGAGCTGCAATGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAAAATGTGGCAACTTTACGATGTCAATGGAGGGAGCTGCAATGGC  400

seq1  TCTTGTATGCACTACGTGAAGTTCTTGGCACCGCCTGGTCCTGTCCTGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTATGCACTACGTGAAGTTCTTGGCACCGCCTGGTCCTGTCCTGTC  450

seq1  CTGTGCTGCTCCGCCGTTTCCTCTAGGTATTAAGTGTTAATATACAAATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCTGCTCCGCCGTTTCCTCTAGGTATTAAGTGTTAATATACAAATT  500

seq1  CTAAATTCATGCTATACATTTTATTTGTGTAATTAAATGCATTATTGTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATTCATGCTATACATTTTATTTGTGTAATTAAATGCATTATTGTGC  550

seq1  ATTTAGGTATTAGAGTAAGGAGCCCAATAAGTTATAATACAGAAGTAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGGTATTAGAGTAAGGAGCCCAATAAGTTATAATACAGAAGTAATT  600

seq1  TTTAAAAATTTAGATATGTATATAAAAATATTTAGAATCTGAGGCAAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAATTTAGATATGTATATAAAAATATTTAGAATCTGAGGCAAAAA  650

seq1  AATTGACTTTTCTCTGCCTCTTCCAGTCACTTTCATCATGAACTTGTCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGACTTTTCTCTGCCTCTTCCAGTCACTTTCATCATGAACTTGTCTA  700

seq1  AGAATTGAGTCTTTCAAAGAAGCCTAGTGCTTTTCAGATGTTGGATTT-G  749
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AGAATTGAGTCTTTCAAAGAAGCCTAGTGCTTTTCAGATGTTGGATTTGG  750

seq1  GACAGGTTACAAAATTATGAGATTTTTGCATTTATTTTTTTCTCATTTAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGTTACAAAATTATGAGATTTTTGCATTTATTTTTTTCTCATTTAA  800

seq1  ATTTATAGTTATCATTGGACATTTGTTAGGATTTTTAAGTAGCTTAGACT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATAGTTATCATTGGACATTTGTTAGGATTTTTAAGTAGCTTAGACT  850

seq1  CATTCATTCCCTTTGAGGTTTTTTTTTTTTTCTTTTTTTTTTTTTTTATG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCATTCCCTTTGAGGTTTTTTTTTTTTTCTTTTTTTTTTTTTTTATG  900

seq1  GTGTTTGGGAAGGAAAAGGGTGATAGAAGGGTACTGCACACACTCAGATG  949
      |||||| |||| ||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTTGGAATGAAAAGGGTGATAGAAGGGTACTGCACACACTCAGATG  950

seq1  ATTCCAGAGTGACATTCATTTTATGGAGGACTGTATGGGGACCTCTCGGA  999
      |||||||||||||||||||||||||||||||||||| |||||||||||| 
seq2  ATTCCAGAGTGACATTCATTTTATGGAGGACTGTAT-GGGACCTCTCGGG  999

seq1  ATTGCC-TGTTTCTTGCAGTGAATGACTAGTGTGG-TCTGA  1038
      | |||| |||||| ||||   |||||||||||||| |||||
seq2  AATGCCTTGTTTC-TGCATGAAATGACTAGTGTGGCTCTGA  1039

seq1: chrY_248291_248459
seq2: B6Ng01-165P13.g_268_435

seq1  TTTGTTTGTTTGTTTGTGCTTGTTTGTTTG--TTTCGAGATAGGGTTTCT  48
      ||||||| |||||||||  |||||||||||  |||||| | |||||||||
seq2  TTTGTTT-TTTGTTTGT--TTGTTTGTTTGGTTTTCGAAACAGGGTTTCT  47

seq1  CTGTGTAACCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCT  98
      ||||||| |||| |||||||||||||||||||||||||||||||||||||
seq2  CTGTGTAGCCCTAGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCT  97

seq1  CGAACTCAGAAATCCACCTGCCTCTGCTTCCCAAGTGCTGGGATTAAAGG  148
       |||||||||||||| ||||||||||| |||| |||||||||||||||||
seq2  GGAACTCAGAAATCCGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGG  147

seq1  AGTGCGCCACCACTGCCCAGC  169
       ||| ||||||||||||||||
seq2  CGTGTGCCACCACTGCCCAGC  168