BAC Information

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BAC

Clone NameB6Ng01-167F20
ChromosomeY (Build37)4 (Build37)
Map Location 1,120,579 - 1,121,07424,900,708 - 24,901,621
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneZfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y, Tspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278
Downstream geneEG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-167F20.bB6Ng01-167F20.g
ACCDH958884DH958885
length966913
definitionDH958884|Mus musculus domesticus DNA, BAC clone: B6Ng01-167F20, 5' end.DH958885|Mus musculus domesticus DNA, BAC clone: B6Ng01-167F20, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(1,120,579 - 1,121,074)(24,900,708 - 24,901,621)
sequence
gaattcttttttttttttttccaatttttattaggtatttaactcattta
catttccaatgctataccaaaagtcccccatatccacccacccccactcc
cctgcccacccactccccctttttggccctggtattcccctgtactgggg
catataaagtttgcaagtccaatgggcctctctttccagtgatggccgac
taggccatcttttgatatatatgcagctagagtcaagagctccggggtac
tggttagctcataatgttgttccacctatagggttgcagatccctttagc
tccttggctactttctctagctcctccattgggagccctatgatccatcc
attagctgactgtgagcatccacttctgtgtttgctgggccccggcatag
tctcacaagagacagctacatctgcgtcctttcaataaaatcttgctagt
gtatgcaatggtgtcagcgtttggatgctgattatggggtggatccctgg
ctatggcagtctctacatggtccatcctttcatctcagctccaaactccg
tctctgtaactccttccatgggtgttttgttcccaaatctaaggaggggc
atagtgtccacacttcagtcttcattctccttgagtttcatgtgtttagc
aaattatatcttatatcttgggtatcctaggtttggggctaatatccact
tatcagtgaatacatattgtgtgagtttctttgtgaatgtgttacctcac
tcaggatgatgccctccaggtccatccatttggctaggaatttcataaat
tcattctttttaatagctgagtagtactccattgtgtagatgttctttat
atatattggatattagccctctatcagatgtaggattgatgagatctttc
cccaaactgttggtttctgttttggcctattgacagtttccttgtcttac
agaagccattcaattt
gaattctgtttgatatgctgagacaaattgttctgtatcatacccggtct
ttgatgcttgttagtgttgtgggctatagcaggaattctgttttaataaa
ggtttcacgtgtcagttggaaacagtatgtattccatggttcccaatcac
attgtttaactctttagtaatgtttttgtctgcttaaaaattcaacagct
gagattttaattatggatttataattttcatgtggataattattgttttg
ctttttgaagactattactagatgtaagtttaaattttaaaaatttattt
gtggtaagttaaaccatttggcatatatgatgactttatctctgatactg
ttatttaacttaaaaatcttttcctttgatagtaatgaaactacattgtt
ccatatagatcatgtttgcttttatgcactattcttctttctgcagttga
aacttgatgtgtgccattatagttttggatgtgtctctagttaatatggt
atagccaaatctgcttttcactggagaatttagtcctttgtatttggagt
gaagattgttaaattcagatttaattatgatctatagtcatgtatttttt
tcctctgctttttctgcatcttctttcctgtcttaacctgcttttggata
gattgattctcccttttatttgtagtattctgtttactaaatgagcttaa
ggctggatgctttgtatccttttagtgatgacccagataattttattata
aatatttttatttaaataattttattataaatattatgcatctgtggtta
ttagtatctttgccctctattgtagaattgaattgtatccttccaagtgt
atatatggaatatatatatatatatatatatatatatatatatatatatt
atatacatataca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1120579_1121074
seq2: B6Ng01-167F20.b_51_544

seq1  TTTTTAATTTTTTTTTCCATTTTTTATTAGGTATTTAACTCATTTACATT  50
      |||||  |||||||||||| ||||||||||||||||||||||||||||||
seq2  TTTTT--TTTTTTTTTCCAATTTTTATTAGGTATTTAACTCATTTACATT  48

seq1  TCCAATGCTATACCAAAAGTCCCCCATATCCACCCACCCCCACTCCCCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATGCTATACCAAAAGTCCCCCATATCCACCCACCCCCACTCCCCTG  98

seq1  CCCACCCACTCCCCCTTTTTGGCCCTGGTATTCCCCTGTACTGGGGCATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCCACTCCCCCTTTTTGGCCCTGGTATTCCCCTGTACTGGGGCATA  148

seq1  TAAAGTTTGCAAGTCCAATGGGCCTCTCTTTCCAGTGATGGCCGACTAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTTTGCAAGTCCAATGGGCCTCTCTTTCCAGTGATGGCCGACTAGG  198

seq1  CCATCTTTTGATATATATGCAGCTAGAGTCAAGAGCTCCGGGGTACTGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTTTTGATATATATGCAGCTAGAGTCAAGAGCTCCGGGGTACTGGT  248

seq1  TAGCTCATAACGTTGTTCCACCTATAGGGTTGGAGATCCCTTTAGCTCCT  300
      |||||||||| ||||||||||||||||||||| |||||||||||||||||
seq2  TAGCTCATAATGTTGTTCCACCTATAGGGTTGCAGATCCCTTTAGCTCCT  298

seq1  TGGCTACTTTCTCTAGCTCCTCCATTGGGAGCCCTATGATCCATCCATTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTACTTTCTCTAGCTCCTCCATTGGGAGCCCTATGATCCATCCATTA  348

seq1  GCTGACTGTGAGCATCCACTTCTGTGTTTGCTGGGCCCCGGCATAGTCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGACTGTGAGCATCCACTTCTGTGTTTGCTGGGCCCCGGCATAGTCTC  398

seq1  ACAAGAGACAGCTACATCTGCCTCCTTTCAATAAAATCTTGCTAGTGTAT  450
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  ACAAGAGACAGCTACATCTGCGTCCTTTCAATAAAATCTTGCTAGTGTAT  448

seq1  GCAATGGTGTCAGCGTTTGGATGCTGATTATGGGGTGGATCCCTGG  496
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATGGTGTCAGCGTTTGGATGCTGATTATGGGGTGGATCCCTGG  494

seq1: chr4_24900708_24901621
seq2: B6Ng01-167F20.g_68_980

seq1  GAATTCTGTTTGATATGCTGAGACAAATTGTTCTGTATCATACCCGGTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTTTGATATGCTGAGACAAATTGTTCTGTATCATACCCGGTCT  50

seq1  TTGATGCTTGTTAGTGTTGTGGGCTATAGCAGGAATTCTGTTTTAATAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGCTTGTTAGTGTTGTGGGCTATAGCAGGAATTCTGTTTTAATAAA  100

seq1  GGTTTCACGTGTCAGTTGGAAACAGTATGTATTCCATGGTTCCCAATCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCACGTGTCAGTTGGAAACAGTATGTATTCCATGGTTCCCAATCAC  150

seq1  ATTGTTTAACTCTTTAGTAATGTTTTTGTCTGCTTAAAAATTCAACAGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTTAACTCTTTAGTAATGTTTTTGTCTGCTTAAAAATTCAACAGCT  200

seq1  GAGATTTTAATTATGGATTTATAATTTTCATGTGGATAATTATTGTTTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTTTAATTATGGATTTATAATTTTCATGTGGATAATTATTGTTTTG  250

seq1  CTTTTTGAAGACTATTACTAGATGTAAGTTTAAATTTTAAAAATTTATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTGAAGACTATTACTAGATGTAAGTTTAAATTTTAAAAATTTATTT  300

seq1  GTGGTAAGTTAAACCATTTGGCATATATGATGACTTTATCTCTGATACTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTAAGTTAAACCATTTGGCATATATGATGACTTTATCTCTGATACTG  350

seq1  TTATTTAACTTAAAAATCTTTTCCTTTGATAGTAATGAAACTACATTGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTAACTTAAAAATCTTTTCCTTTGATAGTAATGAAACTACATTGTT  400

seq1  CCATATAGATCATGTTTGCTTTTATGCACTATTCTTCTTTCTGCAGTTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATAGATCATGTTTGCTTTTATGCACTATTCTTCTTTCTGCAGTTGA  450

seq1  AACTTGATGTGTGCCATTATAGTTTTGGATGTGTCTCTAGTTAATATGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGATGTGTGCCATTATAGTTTTGGATGTGTCTCTAGTTAATATGGT  500

seq1  ATAGCCAAATCTGCTTTTCACTGGAGAATTTAGTCCTTTGTATTTGGAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCCAAATCTGCTTTTCACTGGAGAATTTAGTCCTTTGTATTTGGAGT  550

seq1  GAAGATTGTTAAATTCAGATTTAATTATGATCTATAGTCATGTATTTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATTGTTAAATTCAGATTTAATTATGATCTATAGTCATGTATTTTTT  600

seq1  TCCTCTGCTTTTTCTGCATCTTCTTTCCTGTCTTAACCTGCTTTTGGATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTGCTTTTTCTGCATCTTCTTTCCTGTCTTAACCTGCTTTTGGATA  650

seq1  GATTGATTCTCCCTTTTATTTGTAGTATTCTGTTTACTAAATGAGCTTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGATTCTCCCTTTTATTTGTAGTATTCTGTTTACTAAATGAGCTTAA  700

seq1  GGCTGGATGCTTTGTATCCTTTTAGTGATGACCCAGATAATTTTATTATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGATGCTTTGTATCCTTTTAGTGATGACCCAGATAATTTTATTATA  750

seq1  AATATTTTTATTTAAATAATTTTATTATAAATATTATGCATCTGTGGTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTTTATTTAAATAATTTTATTATAAATATTATGCATCTGTGGTTA  800

seq1  TTAGTATCTTTGCCCTCTATTGTAGAATTGAATTGTATCCTTCCAAGTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTATCTTTGCCCTCTATTGTAGAATTGAATTGTATCCTTCCAAGTGT  850

seq1  ATATATGGAATATATATATATATATATATATATATATATATATATATATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  ATATATGGAATATATATATATATATATATATATATATATATATATATAT-  899

seq1  TATATACATATACA  914
      ||||||||||||||
seq2  TATATACATATACA  913