BAC Information

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BAC

Clone NameB6Ng01-168J20
Chromosome8 (Build37)Y (Build37)
Map Location 54,318,725 - 54,319,8821,870,346 - 1,870,568
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC623935, 1190028D05Rik, LOC676688
Downstream geneAga, Neil3, LOC100040107, Vegfc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-168J20.bB6Ng01-168J20.g
ACCDH959807DH959808
length1,154494
definitionDH959807|Mus musculus domesticus DNA, BAC clone: B6Ng01-168J20, 5' end.DH959808|Mus musculus domesticus DNA, BAC clone: B6Ng01-168J20, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(54,318,725 - 54,319,882)(1,870,346 - 1,870,568)
sequence
gaattcacttttcagataagactgtatggaattaatacaggtaaagaaac
caaaatggagttaggaacatatttgcttaactaaaacagtgcagtgacaa
cacatttaacatctcaagtgtatatatacttttgtacctctcatctccct
tgaggaatacaattatcctacaaagttaccaggaaatactaaagtgactg
agcaagtatgaaaatttaaagatgttcaacatttttttccaagaagaggc
agctggcacacatggagcctcacactgctatccactcattgtcaagccaa
ggctatgtctgctcctcaccctgtgcccttgtataattggaaatggacgc
tacttacactcaaatgcagaatttcatttacagaaacaacagaataaaac
aagttgttttcagcataaatctttagcaaccttgatttttttccaaaggt
tggaaaggtgttattactataatctacagaatataatttgctcgaaatac
atttaatgcaaggtcaagcctaaagctctcatatattcaaacagaataaa
aatgattaaatggtttacttatggaatgtagactgtatgctttaaaatca
ttcacatatgcattgttttgctttggagccttgcaggtgagctaggagca
aaattcttccatgtcttccttcatttcaatgctacctaatctggataatg
ataatctcatgagttgattgtgtttaaacgttatttttaaacttttccaa
tgtatcttactgtgttgcatacatactgtttaagttttctttctgttgtg
ataaacaccaggaataaaatcaatttgcaggggggaagggtgtatctctc
taacccctccaagtcaaagtccattaatgaaaaaagtcagggcagaaact
gaagcaggaacagaagcagaagccacataggaaaggatgtgttctagtta
atgtccctgaatcatgttcttaaatacaactcagaaacactgcccaggag
agtaaatgcccacagtagctgggctcttctgagtcaatcagcaattagac
acttccctacaaacatagccagggaaaaaaatctatgtgggaaatcctta
ttgctatgacaggaattctaaacccatgaattcaaatgtgggctgcctca
cgca
caagaccacacacaaaacacccatagaaggagttacagagacaaaatttg
gagctgtgacaaaaggatggaccatctagtgattgccatatgcagggatc
catcccataatcagcttccaaatgctgacaccattgcatacactagcaag
attttgctgaaaggacccagatatagctgtctcttgtgagactatgccgg
ggcctagcaaacacagaagtggatgatcacagtcagttattggatgggtc
acacggcccccaatggaggagctagagaaagtacccaaggagctaaaggg
aactgcaaccctataggtggaacaacaatatgaactaaccagtacccggg
agctcttgtctctagctgcatatgtatcaaaagatggcttagtcggccat
cactgcaaagagaggcccattggacttgcaaactttatatgccccagtac
aggggaatgccagggccaaaaagggggagtgggtgggtagggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_54318725_54319882
seq2: B6Ng01-168J20.b_45_1198 (reverse)

seq1  TGCGT-AGGCAG-CCACATTTTGAAATTTCATGGGTTTAGAATTCCTGTC  48
      ||||| |||||| ||||| ||||||  |||||||||||||||||||||||
seq2  TGCGTGAGGCAGCCCACA-TTTGAA--TTCATGGGTTTAGAATTCCTGTC  47

seq1  ATAGCAATAAGGATTTCCCACATAGATTTTTCTCCCTTGGCTATGTTTGT  98
      ||||||||||||||||||||||||||||||| |||| |||||||||||||
seq2  ATAGCAATAAGGATTTCCCACATAGATTTTTTTCCC-TGGCTATGTTTGT  96

seq1  AGGGAAGTGTCTTAATTGCTGATTGACTCAGAAGAGCCCAGCCTACTGTG  148
      ||||||||||| ||||||||||||||||||||||||||||| ||||||||
seq2  AGGGAAGTGTC-TAATTGCTGATTGACTCAGAAGAGCCCAG-CTACTGTG  144

seq1  GGCATTTACTCTCCTGGGCAGTTGTTTCTGAGTTGTATTTAAGAACATGA  198
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GGCATTTACTCTCCTGGGCAG-TGTTTCTGAGTTGTATTTAAGAACATGA  193

seq1  TTCAGGGACATTAACTAGAACACATCCTTT-CTATGTGGCTTCTGCTTCT  247
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TTCAGGGACATTAACTAGAACACATCCTTTCCTATGTGGCTTCTGCTTCT  243

seq1  GTTCCTGCTTCAGTTTCTGCCCTGACTTTTTTCATTAATGGACTTTGACT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTGCTTCAGTTTCTGCCCTGACTTTTTTCATTAATGGACTTTGACT  293

seq1  TGGAGGGGTTAGAGAGATACACCCTTCCCCCCTGCAAATTGATTTTATTC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGGGTTAGAGAGATACACCCTTCCCCCCTGCAAATTGATTTTATTC  343

seq1  CTGGTGTTTATCACAACAGAAAGAAAACTTAAACAGTATGTATGCAACAC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGTTTATCACAACAGAAAGAAAACTTAAACAGTATGTATGCAACAC  393

seq1  AGTAAGATACATTGGAAAAGTTTAAAAATAACGTTTAAACACAATCAACT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGATACATTGGAAAAGTTTAAAAATAACGTTTAAACACAATCAACT  443

seq1  CATGAGATTATCATTATCCAGATTAGGTAGCATTGAAATGAAGGAAGACA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGATTATCATTATCCAGATTAGGTAGCATTGAAATGAAGGAAGACA  493

seq1  TGGAAGAATTTTGCTCCTAGCTCACCTGCAAGGCTCCAAAGCAAAACAAT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGAATTTTGCTCCTAGCTCACCTGCAAGGCTCCAAAGCAAAACAAT  543

seq1  GCATATGTGAATGATTTTAAAGCATACAGTCTACATTCCATAAGTAAACC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATGTGAATGATTTTAAAGCATACAGTCTACATTCCATAAGTAAACC  593

seq1  ATTTAATCATTTTTATTCTGTTTGAATATATGAGAGCTTTAGGCTTGACC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAATCATTTTTATTCTGTTTGAATATATGAGAGCTTTAGGCTTGACC  643

seq1  TTGCATTAAATGTATTTCGAGCAAATTATATTCTGTAGATTATAGTAATA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATTAAATGTATTTCGAGCAAATTATATTCTGTAGATTATAGTAATA  693

seq1  ACACCTTTCCAACCTTTGGAAAAAAATCAAGGTTGCTAAAGATTTATGCT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTTTCCAACCTTTGGAAAAAAATCAAGGTTGCTAAAGATTTATGCT  743

seq1  GAAAACAACTTGTTTTATTCTGTTGTTTCTGTAAATGAAATTCTGCATTT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACAACTTGTTTTATTCTGTTGTTTCTGTAAATGAAATTCTGCATTT  793

seq1  GAGTGTAAGTAGCGTCCATTTCCAATTATACAAGGGCACAGGGTGAGGAG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTAAGTAGCGTCCATTTCCAATTATACAAGGGCACAGGGTGAGGAG  843

seq1  CAGACATAGCCTTGGCTTGACAATGAGTGGATAGCAGTGTGAGGCTCCAT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACATAGCCTTGGCTTGACAATGAGTGGATAGCAGTGTGAGGCTCCAT  893

seq1  GTGTGCCAGCTGCCTCTTCTTGGAAAAAAATGTTGAACATCTTTAAATTT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCCAGCTGCCTCTTCTTGGAAAAAAATGTTGAACATCTTTAAATTT  943

seq1  TCATACTTGCTCAGTCACTTTAGTATTTCCTGGTAACTTTGTAGGATAAT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATACTTGCTCAGTCACTTTAGTATTTCCTGGTAACTTTGTAGGATAAT  993

seq1  TGTATTCCTCAAGGGAGATGAGAGGTACAAAAGTATATATACACTTGAGA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTCCTCAAGGGAGATGAGAGGTACAAAAGTATATATACACTTGAGA  1043

seq1  TGTTAAATGTGTTGTCACTGCACTGTTTTAGTTAAGCAAATATGTTCCTA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAAATGTGTTGTCACTGCACTGTTTTAGTTAAGCAAATATGTTCCTA  1093

seq1  ACTCCATTTTGGTTTCTTTACCTGTATTAATTCCATACAGTCTTATCTGA  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCATTTTGGTTTCTTTACCTGTATTAATTCCATACAGTCTTATCTGA  1143

seq1  AAAGTGAATTC  1158
      |||||||||||
seq2  AAAGTGAATTC  1154

seq1: chrY_1870346_1870568
seq2: B6Ng01-168J20.g_343_565

seq1  CTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGA  50
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CTAGAGAAAGTACCCAAGGAGCTAAAGGGAACTGCAACCCTATAGGTGGA  50

seq1  ACAACATTATGAACTAACCATTACCCCTGAGCTCTTGACTCTTGCTGCAT  100
      |||||| ||||||||||||| |||||  ||||||||| |||| |||||||
seq2  ACAACAATATGAACTAACCAGTACCCGGGAGCTCTTGTCTCTAGCTGCAT  100

seq1  AGGTATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCATT  150
      | ||||||||||||||| |||||||||||||||| |||||||||||||||
seq2  ATGTATCAAAAGATGGCTTAGTCGGCCATCACTGCAAAGAGAGGCCCATT  150

seq1  GGACATGCAAACTTTATATGCCCCAGTACAGGGGAACGCCAGGGCCAAAA  200
      |||| ||||||||||||||||||||||||||||||| |||||||||||||
seq2  GGACTTGCAAACTTTATATGCCCCAGTACAGGGGAATGCCAGGGCCAAAA  200

seq1  AGGGGCAGTGGGTGGGTAGGGGA  223
      ||||| |||||||||||||||||
seq2  AGGGGGAGTGGGTGGGTAGGGGA  223