BAC Information

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BAC

Clone NameB6Ng01-168K22
Chromosome1 (Build37)Y (Build37)
Map Location 151,859,310 - 151,860,3751,120,643 - 1,120,705
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100042813, Pla2g4a
Downstream genePtgs2, LOC676712, LOC100043257, LOC100043261, Pdc, BC003331, Tpr, EG625534, EG545370
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-168K22.bB6Ng01-168K22.g
ACCDH959859DH959860
length1,05063
definitionDH959859|Mus musculus domesticus DNA, BAC clone: B6Ng01-168K22, 5' end.DH959860|Mus musculus domesticus DNA, BAC clone: B6Ng01-168K22, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(151,859,310 - 151,860,375)(1,120,643 - 1,120,705)
sequence
gaattcactcggacaaccggatccttctaccgcaaagcttttattgcttc
aacataaggaagaccccgaacccggaaaatggcgctgcttatatagcccg
cagcgtgacatttcagcacctgatgtggcatgacagcacctgattagttg
ctcgcccatcaccccattactacaccccgagatgggcagtgactgggtgt
gaatttactcttgcacttacgcataaggcttgtttactagttaggcacag
tggaagccagcgccatcttataatggcgattgctcatggcacggctcttc
acactcacatacagaaaattaaataaatagatacatctaatttttaaaga
aagaatagaaaaaaagaaaaagaaaagaaaagaaaaaaagaaaaagaaaa
tccccttgatcccacctcctcctctggcccctttcttttatcacccacac
ttgcttatttgattggcaacatttccctgctttctgaatttctttattct
tcagttttatgtctactttctgctgccttggttctgtcacatagtgatgc
tatctcccagggggtaccctttatctccacataaccaatgggtcctgctg
atggtgtctgcagctcttgactcactctgactctgctaagataaaaacta
accacacatgcttttgacatctcgtctatttgggaacatggtactagaca
attgctaagaaatttcagcatgcttaaatggactagagactgcaagacaa
actgtccttggggcagcagcaaaacctccagattgtcaaaccatccaaat
ttcaaaggtgctgacttgtgtgaaggcagccataagatcactctgggtgc
catcaggatccaaaatgtttttgttgttgttgttgttttgggttttttag
aaacaatatcataattttaatgattagaagtttatttcttttggtcttct
tatatgctataatgtccccctttcccttactatttctaccttcctgctct
agtatggtgtggcattctcaaatctgttatttcatgtctctctttactgt

cagggccaaaaagggggagtgggtgggcaggggagtgggggtgggtggat
atggtggactttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_151859310_151860375
seq2: B6Ng01-168K22.b_45_1094 (reverse)

seq1  ACAGTAAAGAAGGAAGGACATGAAATAACAGAATTTTGAGAATGCCACCA  50
      ||||||||||  ||  ||||||||||||||||  ||||||||||||| ||
seq2  ACAGTAAAGA--GA--GACATGAAATAACAGA--TTTGAGAATGCCA-CA  43

seq1  CCATACTTAAGGAGCAGGAAGGTAAGAAATTAGTAAGGGAAAGGGGGAAC  100
      |||||||    |||||||||||| ||||| ||||||||||||||||| ||
seq2  CCATACT---AGAGCAGGAAGGT-AGAAA-TAGTAAGGGAAAGGGGG-AC  87

seq1  ATTATAAGCATATAAGAAGACCAAAAGAAATAAAACTTCTAATCATTAAA  150
      ||||| ||||||||||||||||||||||||| ||||||||||||||||||
seq2  ATTAT-AGCATATAAGAAGACCAAAAGAAAT-AAACTTCTAATCATTAAA  135

seq1  ATTATGATATTGTTTCTAAAAAAACCCAAAACAACAACAACAACAAAAAC  200
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  ATTATGATATTGTTTCT-AAAAAACCCAAAACAACAACAACAACAAAAAC  184

seq1  ATTTTGGATCCTGATGGCACCCAGAGTGATCTTATGGCTGCCTTCACACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGGATCCTGATGGCACCCAGAGTGATCTTATGGCTGCCTTCACACA  234

seq1  AGTCAGCACCTTTGAAATTTGGATGGTTTGACAATCTGGAGGTTTTGCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGCACCTTTGAAATTTGGATGGTTTGACAATCTGGAGGTTTTGCTG  284

seq1  CTGCCCCAAGGACAGTTTGTCTTGCAGTCTCTAGTCCATTTAAGCATGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCCAAGGACAGTTTGTCTTGCAGTCTCTAGTCCATTTAAGCATGCT  334

seq1  GAAATTTCTTAGCAATTGTCTAGTACCATGTTCCCAAATAGACGAGATGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTTCTTAGCAATTGTCTAGTACCATGTTCCCAAATAGACGAGATGT  384

seq1  CAAAAGCATGTGTGGTTAGTTTTTATCTTAGCAGAGTCAGAGTGAGTCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGCATGTGTGGTTAGTTTTTATCTTAGCAGAGTCAGAGTGAGTCAA  434

seq1  GAGCTGCAGACACCATCAGCAGGACCCATTGGTTATGTGGAGATAAAGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGCAGACACCATCAGCAGGACCCATTGGTTATGTGGAGATAAAGGG  484

seq1  TACCCCCTGGGAGATAGCATCACTATGTGACAGAACCAAGGCAGCAGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCCCTGGGAGATAGCATCACTATGTGACAGAACCAAGGCAGCAGAAA  534

seq1  GTAGACATAAAACTGAAGAATAAAGAAATTCAGAAAGCAGGGAAATGTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGACATAAAACTGAAGAATAAAGAAATTCAGAAAGCAGGGAAATGTTG  584

seq1  CCAATCAAATAAGCAAGTGTGGGTGATAAAAGAAAGGGGCCAGAGGAGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATCAAATAAGCAAGTGTGGGTGATAAAAGAAAGGGGCCAGAGGAGGA  634

seq1  GGTGGGATCAAGGGGATTTTCTTTTTCTTTTTTTCTTTTCTTTTCTTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGATCAAGGGGATTTTCTTTTTCTTTTTTTCTTTTCTTTTCTTTTT  684

seq1  CTTTTTTTCTATTCTTTCTTTAAAAATTAGATGTATCTATTTATTTAATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTTCTATTCTTTCTTTAAAAATTAGATGTATCTATTTATTTAATT  734

seq1  TTCTGTATGTGAGTGTGAAGAGCCGTGCCATGAGCAATCGCCATTATAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTATGTGAGTGTGAAGAGCCGTGCCATGAGCAATCGCCATTATAAG  784

seq1  ATGGCGCTGGCTTCCACTGTGCCTAACTAGTAAACAAGCCTTATGCGTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCGCTGGCTTCCACTGTGCCTAACTAGTAAACAAGCCTTATGCGTAA  834

seq1  GTGCAAGAGTAAATTCACACCCAGTCACTGCCCATCTCGGGGTGTAGTAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAAGAGTAAATTCACACCCAGTCACTGCCCATCTCGGGGTGTAGTAA  884

seq1  TGGGGTGATGGGCGAGCAACTAATCAGGTGCTGTCATGCCACATCAGGTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTGATGGGCGAGCAACTAATCAGGTGCTGTCATGCCACATCAGGTG  934

seq1  CTGAAATGTCACGCTGCGGGCTATATAAGCAGCGCCATTTTCCGGGTTCG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAATGTCACGCTGCGGGCTATATAAGCAGCGCCATTTTCCGGGTTCG  984

seq1  GGGTCTTCCTTATGTTGAAGCAATAAAAGCTTTGCGGTAGAAGGATCCGG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCTTCCTTATGTTGAAGCAATAAAAGCTTTGCGGTAGAAGGATCCGG  1034

seq1  TTGTCCGAGTGAATTC  1066
      ||||||||||||||||
seq2  TTGTCCGAGTGAATTC  1050

seq1: chrY_1120643_1120705
seq2: B6Ng01-168K22.g_72_134 (reverse)

seq1  AAAAGTCCCCCATATCCACCCACCCCCACTCCCCTGCCCACCCACTCCCC  50
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTCCACCATATCCACCCACCCCCACTCCCCTGCCCACCCACTCCCC  50

seq1  CTTTTTGGCCCTG  63
      |||||||||||||
seq2  CTTTTTGGCCCTG  63