BAC Information

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BAC

Clone NameB6Ng01-177H21
ChromosomeY (Build37)
Map Location 1,338,597 - 1,479,686
singlet/doubletdoublet
Overlap geneRhoay-ps1, Zfy2
Upstream geneEif2s3y, Tspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278, EG667079, LOC667089
Downstream geneUbe1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-177H21.bB6Ng01-177H21.g
ACCGA004748GA004749
length1,003815
definitionB6Ng01-177H21.b B6Ng01-177H21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(1,338,597 - 1,339,595)(1,479,209 - 1,479,686)
sequence
gaattcatctttcctttgctttgtttttcatcaagcaccctagactatag
atttagaaaacataaagtaacaaaagaaatgttcctggcttcctctaatg
ggaagattggagcaagtgagatgcttcctgattgcattttggtgtcctcc
acccgtaaccctgagtctgtaagactcaataataacttaaatggtattaa
ataatatttgtccttcctctcccagattgctctctcagtggaaaggacaa
atttcttccacaattttaagaagccagttcagggaagctgggaagctgtt
ttctagataactaggatctggttaccaaaaaagaaaaaaaaaaaaaaaag
ggaagagagctgcacatagtgcatatggactagtactactagtacactag
gatcccactcattcatacatgtactacgcattgtatatatgcttgtgtgt
tatacacctgtacttgtgtgtacacatacagacagacagacacatacact
cagctgttgtaagagagtatgtaacctaacacatatttataaagatgtga
gtatggtctgagtcctcaggggtgttatgtattggaagtaattttgctgg
taaatgcttatgcttatctcatctgttcttgacagatgacagtgttaagt
ggactaaaacttttaaatattctgcttaagatactaacatggaaaggtgt
ggcacttatgacctatactcccaaagcttctttgacctcattgggctact
gttgcagtaagtggcatatggttaatattagaatttcaagtgtgtaagag
aagtaaagaggaacagagaagtagcaattggaaaatgtcaggagggtgct
tgttttcagggtttatgaaggctttctcctagggaaatgaacctatccat
ggtgaaacagtaccggttatgtgggtagaacagtttgacatgcaaaagta
gtagaagcctgaaggaaaaataatgaacattgggtgtgtggttattaaag
aac
gaattctaaaaaaaaaaaaaatgtgtttttcaattcaaagtcagtagagg
tatttttttccatttccattttcaagtttctgtatattctaaaatatatg
tgtttattatatgcactgtagaaaatatctttgtaatgtaaggagagatt
agtcaactctattaaactactttctggacgtcagttagccttagacacgg
agagctatgatgacttaagatgtgctgcagagtgctcacaggatcacaaa
ctgatgagtattagcttgtggtgacactcacccacccactctcacacaca
tacacaaacacacacacacacacagaaacacagacgcaaacacacagaca
cacagacacacagacacacacacacacacacacacacacacacacacaca
cacacactcacacacacaccagccattggaatacccactccagtagagac
tctcgtgacagtcctaaaatattagacacagttcctagtcgaaaagttta
tggaaactttgtctccatgaaccatagcatcctggaaaacgaatgctcca
aacttatccttgcattatcattgattgaatctgggtgccttctttcagtg
ttgttttattataagtgcctccaagcaatgacttggcaaatacctaagca
aaatccaactttttttcctggccttcaccaatatcctaggcagtctttga
gccaattctgggcttgggaattttcagaacttgcatatgaattctgcagc
cagccccacacacccaggaggggagctccactccacgccctccaacattc
ccaggatcagatgat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1338597_1339595
seq2: B6Ng01-177H21.b_47_1049

seq1  GAATTCATCTTTCCTTTGCTTTGTTTTTCATCAAGCACCCTAGACTATAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCTTTCCTTTGCTTTGTTTTTCATCAAGCACCCTAGACTATAG  50

seq1  ATTTAGAAAACATAAAGTAACAAAAGAAATGTTCCTGGCTTCCTCTAATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGAAAACATAAAGTAACAAAAGAAATGTTCCTGGCTTCCTCTAATG  100

seq1  GGAAGATTGGAGCAAGTGAGATGCTTCCTGATTGCATTTTGGTGTCCTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGATTGGAGCAAGTGAGATGCTTCCTGATTGCATTTTGGTGTCCTCC  150

seq1  ACCCGTAACCCTGAGTCTGTAAGACTCAATAATAACTTAAATGGTATTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCGTAACCCTGAGTCTGTAAGACTCAATAATAACTTAAATGGTATTAA  200

seq1  ATAATATTTGTCCTTCCTCTCCCAGATTGCTCTCTCAGTGGAAAGGACAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATATTTGTCCTTCCTCTCCCAGATTGCTCTCTCAGTGGAAAGGACAA  250

seq1  ATTTCTTCCACAATTTTAAGAAGCCAGTTCAGGGAAGCTGGGAAGCTGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTTCCACAATTTTAAGAAGCCAGTTCAGGGAAGCTGGGAAGCTGTT  300

seq1  TTCTAGATAACTAGGATCTGGTTACCAAAAAAGAAAAAAAAAAAAAAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGATAACTAGGATCTGGTTACCAAAAAAGAAAAAAAAAAAAAAAAG  350

seq1  GGAAGAGAGCTGCACATAGTGCATATGGACTAGTACTACTAGTACACTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAGAGCTGCACATAGTGCATATGGACTAGTACTACTAGTACACTAG  400

seq1  GATCCCACTCATTCATACATGTACTACGCATTGTATATATGCTTGTGTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCCACTCATTCATACATGTACTACGCATTGTATATATGCTTGTGTGT  450

seq1  TATACACCTGTACTTGTGTGTACACATACAGACAGACAGACACATACACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACACCTGTACTTGTGTGTACACATACAGACAGACAGACACATACACT  500

seq1  CAGCTGTTGTAAGAGAGTATGTAACCTAACACATATTTATAAAGATGTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGTTGTAAGAGAGTATGTAACCTAACACATATTTATAAAGATGTGA  550

seq1  GTATGGTCTGAGTCCTCAGGGGTGTTATGTATTGGAAGTAATTTTGCTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGGTCTGAGTCCTCAGGGGTGTTATGTATTGGAAGTAATTTTGCTGG  600

seq1  TAAATGCTTATGCTTATCTCATCTGTTCTTGACAGATGACAGTGTTAAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGCTTATGCTTATCTCATCTGTTCTTGACAGATGACAGTGTTAAGT  650

seq1  GGACTAAAACTTTTAAATATTCTGCTTAAGATACTAACATGGAAAGGTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTAAAACTTTTAAATATTCTGCTTAAGATACTAACATGGAAAGGTGT  700

seq1  GGCACTTATGACCTATACTCCCAAAGCTTCTTTGACCTCATTGGGCTACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACTTATGACCTATACTCCCAAAGCTTCTTTGACCTCATTGGGCTACT  750

seq1  GTTGCAGTAAGTGGCATATGGTTAATATTAGAATTTCAAGTGTGTAAGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCAGTAAGTGGCATATGGTTAATATTAGAATTTCAAGTGTGTAAGAG  800

seq1  AAGTAAAGAGGAACAGAGAAGTAGCAATTGGAAAATGTCAGGAGGGTGCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAAGAGGAACAGAGAAGTAGCAATTGGAAAATGTCAGGAGGGTGCT  850

seq1  TGTTTTCAGGGTTTATGAAGGCTTTCTCCTAGGGAAATGAACCTATCCAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTCAGGGTTTATGAAGGCTTTCTCCTAGGGAAATGAACCTATCCAT  900

seq1  GGTGAAACAGTACCGG-TATGTGGGTAG-ACAGTTGACCATGCAAAAGTA  948
      |||||||||||||||| ||||||||||| ||||||   ||||||||||||
seq2  GGTGAAACAGTACCGGTTATGTGGGTAGAACAGTTTGACATGCAAAAGTA  950

seq1  GTAGAAGCCTG-AGGAAAAAT-ATGACATTTGGGTGTGTGGTATTTAAAG  996
      ||||||||||| ||||||||| ||||   |||||||||||||  ||||||
seq2  GTAGAAGCCTGAAGGAAAAATAATGAACATTGGGTGTGTGGTTATTAAAG  1000

seq1  AAC  999
      |||
seq2  AAC  1003

seq1: chrY_1479209_1479686
seq2: B6Ng01-177H21.g_64_541 (reverse)

seq1  TGTCTAATATTTTAGGACTGTCACGAGAGTCTCTACTGGAGTGGGTATTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTAATATTTTAGGACTGTCACGAGAGTCTCTACTGGAGTGGGTATTC  50

seq1  CAATGGCTGGTGTGTGTGTGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGCTGGTGTGTGTGTGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  100

seq1  TGTGTGTGTGTGTGTCTGTGTGTCTGTGTGTCTGTGTGTTTGCGTCTGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTCTGTGTGTCTGTGTGTCTGTGTGTTTGCGTCTGTG  150

seq1  TTTCTGTGTGTGTGTGTGTGTTTGTGTATGTGTGTGAGAGTGGGTGGGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTGTGTGTGTGTGTGTTTGTGTATGTGTGTGAGAGTGGGTGGGTG  200

seq1  AGTGTCACCACAAGCTAATACTCATCAGTTTGTGATCCTGTGAGCACTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCACCACAAGCTAATACTCATCAGTTTGTGATCCTGTGAGCACTCT  250

seq1  GCAGCACATCTTAAGTCATCATAGCTCTCCGTGTCTAAGGCTAACTGACG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCACATCTTAAGTCATCATAGCTCTCCGTGTCTAAGGCTAACTGACG  300

seq1  TCCAGAAAGTAGTTTAATAGAGTTGACTAATCTCTCCTTACATTACAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAAAGTAGTTTAATAGAGTTGACTAATCTCTCCTTACATTACAAAG  350

seq1  ATATTTTCTACAGTGCATATAATAAACACATATATTTTAGAATATACAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTCTACAGTGCATATAATAAACACATATATTTTAGAATATACAGA  400

seq1  AACTTGAAAATGGAAATGGAAAAAAATACCTCTACTGACTTTGAATTGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGAAAATGGAAATGGAAAAAAATACCTCTACTGACTTTGAATTGAA  450

seq1  AAACACATTTTTTTTTTTTTTAGAATTC  478
      ||||||||||||||||||||||||||||
seq2  AAACACATTTTTTTTTTTTTTAGAATTC  478