BAC Information

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BAC

Clone NameB6Ng01-177P21
ChromosomeY (Build37)
Map Location 985,185 - 985,735
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039202, Zfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y, Tspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y
Downstream geneLOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-177P21.bB6Ng01-177P21.g
ACCGA005108GA005109
length5461,195
definitionB6Ng01-177P21.b B6Ng01-177P21.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ctgtcaaggtctcagtttattactctgaaagccaggtattaagcacacag
cgagaggaataggtaggggatgaaggggattaactaagaacaaagaagtg
ggcatctgggggcatgaaggctgaattcaggctgcaagcaggaggcactc
tgagtcctatctccagaatgtagatctctccttaacagccttgcgtggta
ggctgggctcagtacataactcaggtccttagaagtgttgggagtcagga
agagataaggaagaggggactataattcagctttttatagtcacaggtgc
caggaagggaatagggaggagggggtaatgaatcgctccttagcacaagg
ccatttggcttgttatggtgggaagctgtgaaaggcccactttctcatgg
tatggtctccaacaagtatcaactccctgccttgaactaatggctctgac
agttgtttggctacactagagatatatctgtctcccacaatggatgagcc
accaaacaaagaaggtcactcacagggagaaagttgacagagattt
gaattcttgctggcgagatactagctcaggcaagaagtggcaccgagaaa
cccgggaatttatcatcaccaggcgctgataggtgacccccccccccatt
tcacgggtcgcattcagaactacgggacaatttacagctctgcaaggtat
gtacagtcttgaaatttctccagagttagatgcccttttgattgttttca
cggcgattattccttccctttcggtttcgttttgcttccaccgctggaac
tgctgactggttctcagtcgcggttaggcctggacagcgaccagtattgc
tgactgaggcctggacagtgaccagtatgggaatctcccactcgatggtg
accgccttatggtcggtcctgaagcagtgtggcttgaaagtcgccaccaa
gacattagaaggctttgtaaaagaggtagatcacatagcaccgtggtttg
cgtgctcagggtccttaactatcccctcttgggagaaactcaagggagat
ttagttagggaactggagaatggcaaacttaaagcaggaaccatgccgtt
gtggaagctgataagatcgtgcttaaaggacgaggaatgtcgacaagtgg
ttaagacagggaagagaattctggatgaaattcaagacagtctatcagag
gtagagcggggagagagattaggagcaaaacagacacatggtgcaccaat
taagcatacaggcctttccacggaccttgagcctgaggaagagataatgt
cgggaaagaatacccggggtgagtttggaaggaatgagaaggaaaaagag
aagaagaaagatcaatcatcagaggtcctaggagaaggaacagataccca
cctcctagatgcatttaaggacctagctccttagtagctcagaaatcaga
tggagggacttagcctgtcctgaggaaacgggcttgggaggaaggaagca
gcttcttttatgagagagaaaagtatcagccagaataaaattgcaagcta
attcattccagaaaaaggcaaaagcggctgcgaaggccaggctggctgct
cgcatcaagactgtcgccttcaggtcttagtgcctctggtcttatgtggc
agaggtatcatcagactaccatccatcaaaatggtacatgggatatgtac
ggcttctcagctctgaaaggtcctagaggaaagtgacgagtcatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_985185_985735
seq2: B6Ng01-177P21.b_47_598

seq1  GAATTCCTGTCAAGGTCTCAGTTTATTACTCTGAAAGCCAGGTATTAAGC  50
      ||||||||||||||||||                 |||||||||||||||
seq2  GAATTCCTGTCAAGGTCTNNNNNNNNNNNNNNNNNAGCCAGGTATTAAGC  50

seq1  ACACAGCGAGAGGAATAGGTAGGGGATGAAGGGGATTAACTAAGAACAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGCGAGAGGAATAGGTAGGGGATGAAGGGGATTAACTAAGAACAAA  100

seq1  GAAGTGGGCATCTGGGGGCATGAAGGCTGAATTCAGGCTGCAAGCAGGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGGGCATCTGGGGGCATGAAGGCTGAATTCAGGCTGCAAGCAGGAG  150

seq1  GCACTCTGAGTCCTATCTCCAGAATGTAGATCTCTCCTTAACAGCCTTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTCTGAGTCCTATCTCCAGAATGTAGATCTCTCCTTAACAGCCTTGC  200

seq1  GTGGTAGGCTGGGCTCAGTACATAACTCAGGTCCTTAGAAGTGTTGGGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTAGGCTGGGCTCAGTACATAACTCAGGTCCTTAGAAGTGTTGGGAG  250

seq1  TCAGGAAGAGATAAGGAAGAGGGGACTATAATTCAGCTTTTTATAGTCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGAAGAGATAAGGAAGAGGGGACTATAATTCAGCTTTTTATAGTCAC  300

seq1  AGGTGCCAGGAAGGGAATAGGGAGGAGGGGGTAATGAATCGCTCCTTAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGCCAGGAAGGGAATAGGGAGGAGGGGGTAATGAATCGCTCCTTAGC  350

seq1  ACAAGGCCATTTGGCTTGTTATGGTGGGAAGCTGTGAAAGGCCCACTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGCCATTTGGCTTGTTATGGTGGGAAGCTGTGAAAGGCCCACTTTC  400

seq1  TCATGGTATGGTCTCCAACAAGTATCAACTCCCTGCCTTGAACTAATGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGTATGGTCTCCAACAAGTATCAACTCCCTGCCTTGAACTAATGGC  450

seq1  TCTGACAGTTGTTTGGCTACACTAGAGATATACCTGCCTCCCACAATGGA  500
      |||||||||||||||||||||||||||||||| ||| |||||||||||||
seq2  TCTGACAGTTGTTTGGCTACACTAGAGATATATCTGTCTCCCACAATGGA  500

seq1  TGAGCCACCAAACAAAGAAGGTCACTCACAGGGAG-AAGTTGACAGAGAT  549
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TGAGCCACCAAACAAAGAAGGTCACTCACAGGGAGAAAGTTGACAGAGAT  550

seq1  TT  551
      ||
seq2  TT  552