BAC Information

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BAC

Clone NameB6Ng01-201G05
ChromosomeY (Build37)2 (Build37)
Map Location 1,982,504 - 1,982,556139,600,555 - 139,601,713
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840
Downstream geneLOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236, EG631479, LOC667244, LOC100039652
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-201G05.bB6Ng01-201G05.g
ACCGA022179GA022180
length1281,160
definitionB6Ng01-201G05.b B6Ng01-201G05.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(1,982,504 - 1,982,556)(139,600,555 - 139,601,713)
sequence
tctgtttagatttgtacctcattttcaggttgctttctttatagcttggt
gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt
atttgtttagattacattttggacattg
gaattctttgacaaacaaacagagatgagatgatgttggagcaaaaactt
agcagtctgtttattggggaccaactccccacctccacattgtaaacatt
aagtgtcgtcaaaattgtatcccatgtatggccagaccagagcccaggct
gctcccctccatcggggcctccccaccaggaactggtagttattgcttgg
ttccaacgaaagaaaagctgtagggagttccaggtcctgggcctgcagtt
cagggcaagaatagtttttgcctcccagcccgggcacagccaatgggtgt
gttttccccaccacttgatgctcagctcccacccagacctggcacgtccc
accagctctcaaagaaacctttgtgaaaccaatgaataagccactacatt
ccacatagctacgtgactattttcatgtgttcataaatgttttctgaaaa
tcctgaattcctacctttacattctgagtgttttcttgctcaatgtctaa
gtgtgtgcagagggtgtccaggtagcagaagaaagagattcttgggctag
ccgtttaaatgggctctgtagtgagccacatgtatatatactgtgtgact
ctgggcaaggtactccttagcctttgtcccctagagtgagggagggccgg
taaggggtgtcgctgctcatctggttatcttatgtcatacaaactgtgaa
tgggctgcacttcaaatagtaatcagcacaaagcacagaattaaatatca
gaagtcaataccgtgttgggatgtcattatttaccaaccccaagctctgt
tcttcctgaactgatcaggaagctgcaatctagtttgcctagttcttaac
tgggcaattctttatattgaagcaattaataaaactgccctgagcaagcc
agctcattgccattgaagacatcttgtgacacatctatctctgggtgtct
ggatgttagcttgaagagtacaggttagcctatgggaaaaagataccccc
acccgtttctgctgatgaccggagtgccaggcaactgttcctctcctcaa
gatgatccacttgcagcttgcttgctcccagccatcctacagcgacaatg
ttgccaaaacgaggatcaccttttgatgccaggggcgaccaggtccagat
gactctcaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1982504_1982556
seq2: B6Ng01-201G05.b_98_150

seq1  TTGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  50

seq1  TGT  53
      |||
seq2  TGT  53

seq1: chr2_139600555_139601713
seq2: B6Ng01-201G05.g_66_1225

seq1  GAATTCTTTGACAAACAAACAGAGATGAGATGATGTTGGAGCAAAAACTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGACAAACAAACAGAGATGAGATGATGTTGGAGCAAAAACTT  50

seq1  AGCAGTCTGTTTATTGGGGACCAACTCCCCACCTCCACATTGTAAACATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTCTGTTTATTGGGGACCAACTCCCCACCTCCACATTGTAAACATT  100

seq1  AAGTGTCGTCAAAATTGTATCCCATGTATGGCCAGACCAGAGCCCAGGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTCGTCAAAATTGTATCCCATGTATGGCCAGACCAGAGCCCAGGCT  150

seq1  GCTCCCCTCCATCGGGGCCTCCCCACCAGGAACTGGTAGTTATTGCTTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCCCTCCATCGGGGCCTCCCCACCAGGAACTGGTAGTTATTGCTTGG  200

seq1  TTCCAACGAAAGAAAAGCTGTAGGGAGTTCCAGGTCCTGGGCCTGCAGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAACGAAAGAAAAGCTGTAGGGAGTTCCAGGTCCTGGGCCTGCAGTT  250

seq1  CAGGGCAAGAATAGTTTTTGCCTCCCAGCCCGGGCACAGCCAATGGGTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCAAGAATAGTTTTTGCCTCCCAGCCCGGGCACAGCCAATGGGTGT  300

seq1  GTTTTCCCCACCACTTGATGCTCAGCTCCCACCCAGACCTGGCACGTCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCCCCACCACTTGATGCTCAGCTCCCACCCAGACCTGGCACGTCCC  350

seq1  ACCAGCTCTCAAAGAAACCTTTGTGAAACCAATGAATAAGCCACTACATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGCTCTCAAAGAAACCTTTGTGAAACCAATGAATAAGCCACTACATT  400

seq1  CCACATAGCTACGTGACTATTTTCATGTGTTCATAAATGTTTTCTGAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATAGCTACGTGACTATTTTCATGTGTTCATAAATGTTTTCTGAAAA  450

seq1  TCCTGAATTCCTACCTTTACATTCTGAGTGTTTTCTTGCTCAATGTCTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAATTCCTACCTTTACATTCTGAGTGTTTTCTTGCTCAATGTCTAA  500

seq1  GTGTGTGCAGAGGGTGTCCAGGTAGCAGAAGAAAGAGATTCTTGGGCTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGCAGAGGGTGTCCAGGTAGCAGAAGAAAGAGATTCTTGGGCTAG  550

seq1  CCGTTTAAATGGGCTCTGTAGTGAGCCACATGTATATATACTGTGTGACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTTTAAATGGGCTCTGTAGTGAGCCACATGTATATATACTGTGTGACT  600

seq1  CTGGGCAAGGTACTCCTTAGCCTTTGTCCCCTAGAGTGAGGGAGGGCCGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCAAGGTACTCCTTAGCCTTTGTCCCCTAGAGTGAGGGAGGGCCGG  650

seq1  TAAGGGGTGTCGCTGCTCATCTGGTTATCTTATGTCATACAAACTGTGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGGGTGTCGCTGCTCATCTGGTTATCTTATGTCATACAAACTGTGAA  700

seq1  TGGGCTGCACTTCAAATAGTAATCAGCACAAAGCACAGAATTAAATATCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTGCACTTCAAATAGTAATCAGCACAAAGCACAGAATTAAATATCA  750

seq1  GAAGTCAATACCGTGTTGGGATGTCATTATTTACCAACCCCAAGCTCTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTCAATACCGTGTTGGGATGTCATTATTTACCAACCCCAAGCTCTGT  800

seq1  TCTTCCTGAACTGATCAGGAAGCTGCAATCTAGTTTGCCTAGTTCTTAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCTGAACTGATCAGGAAGCTGCAATCTAGTTTGCCTAGTTCTTAAC  850

seq1  TGGGCAATTCTTTATATTGAAGCAATTAATAAAACTGCCCTGAGCAAGCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCAATTCTTTATATTGAAGCAATTAATAAAACTGCCCTGAGCAAGCC  900

seq1  AGCTCATTGCCATTGAAGACATCTTGTGACACATCTATCTCTGGGTGTCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCATTGCCATTGAAGACATCTTGTGACACATCTATCTCTGGGTGTCT  950

seq1  GGATG-TAGCTTGAAGAGTACAGGTTAGCCTATGGG-AAAAGATA-CCCC  997
      ||||| |||||||||||||||||||||||||||||| |||||||| ||||
seq2  GGATGTTAGCTTGAAGAGTACAGGTTAGCCTATGGGAAAAAGATACCCCC  1000

seq1  ACCCGTTTTCTTGGCTGATGACC-GAGTG-CAGGC-ACTGTT-CTCT-CT  1042
      ||||| |||||  |||||||||| ||||| ||||| |||||| |||| ||
seq2  ACCCG-TTTCT--GCTGATGACCGGAGTGCCAGGCAACTGTTCCTCTCCT  1047

seq1  CCAGATGATCCACCTGCCAGCTTGCCTGCTTCCCAGCATCCCTACAGCCG  1092
      | ||||||||||| || |||||||| ||| |||||||   ||||||| ||
seq2  CAAGATGATCCACTTG-CAGCTTGCTTGC-TCCCAGCCATCCTACAG-CG  1094

seq1  ACCATGTTGC--AAACAGAGATCAACCCTTTGATGCCCAGGGGCAGACAA  1140
      || |||||||  ||||   |||| ||| ||||||| |||||||| ||| |
seq2  ACAATGTTGCCAAAACGAGGATC-ACCTTTTGATG-CCAGGGGC-GACCA  1141

seq1  GGTCCAGATGAGTCTCAGA  1159
      ||||||||||| |||||||
seq2  GGTCCAGATGACTCTCAGA  1160