BAC Information

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BAC

Clone NameB6Ng01-211B04
ChromosomeY (Build37)
Map Location 1,264,726 - 1,390,575
singlet/doubletdoublet
Overlap geneLOC667089, Rhoay-ps1, Zfy2
Upstream geneJarid1d, Eif2s3y, Tspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278, EG667079
Downstream geneUbe1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-211B04.bB6Ng01-211B04.g
ACCGA029247GA029248
length1,1161,147
definitionB6Ng01-211B04.b B6Ng01-211B04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(1,264,726 - 1,265,851)(1,389,396 - 1,390,575)
sequence
gaattcagcagaagtaccattgtgggaagcagcaaagtttttgattctct
aagacaacagatacactggctaaatcttccaggtacaaccacttggtagc
attgagtctattcttagcatgcagcttctagaaaaaaagcataaagaatt
aagccatgtttcctctggacttgacatgtcagtatcactaatgagtcaca
ttcatgtcaaacagtttcatcactgttacaagatgcctagcaacataagt
gaaagacaggtccatggtcacatgattatgaaaggacatgaaggagcaca
attgttcaacttattagcatcaagtaagcatcaacacaggaagggactaa
agtcaataaacaccttccaagatgtgttccaaatgatcaagttcctttac
aagtttctcaccccttctgtacacacccatcaattgactaactcattgat
taaagccctcagggtccaatcacttttcagagtggatattgtactaccta
tgaacattgtattgtggatgaaagccttcatcaaagacccatgactgaca
tttcaaacccatttcaccacagcattctttatttgacaaaaagttataga
atccatctatctcttcaaggatatctctctctgggagttccaaatggaca
atgtccaggccaacagcatcagaacccccaggaaccttcataaatatgag
ttcaagtagaagaaaaatgcaatgcaagtttagggtcttgagcctccatc
cgtgcatcttaaaccaataaggtggagccagaagtttaggtcagaagtct
gaacttcacctatactaaaaccaactctgaggatttctagccatctccag
tttctgtctggtacttagtcacaccaagtctgcagtaaggcatattgtgt
aatataagatagtgccagcagttgattgttaaaacccactatgtgttgac
ttgtatgtaaaatgagaaatctatatatagacacacacatacatacacac
atactcacagaaagagtagagtgagagctgagtcttagacccccaggaga
gagtgaaatctttgtagcacagaggtcagtgagaaactgtctgtgttctt
gttctggacaaatcag
gaattcaataccagaggatgagaaaatcaaagtaattggtcactatgtaa
ctaataggatgatagccttagatttataaaacactatcccataaaaccaa
acaacaacaacaaagacctgactctaatatattattgaaggtttttataa
gatgctcattctataaattcccttgataccaaccatggcaacctgagttc
agttcctggcactaacatgacagaaattgagaaccaccttttacaagttg
tcctctaacctgaacattaatactttggtacttatgcttatgtaagacat
atagaaataaaacaatttaagcttaatattgggtacatataaaaaagtta
atgtatttgcataaaaataaagacatctactttatattaaaacaaaatat
taaaaaatgtgtttaatttttgattaggtaaactggctatttctcataca
agtctaaagcaaattaagaaatttacttgaaacattaaagtgactcttat
gttaataggtgttaataggactttcttgtctttctgtttcagacatgaat
ttatatttattatacctggtatcagttcattttttgtccagctaattaaa
gcaaaaccatagtctcttacaaactttttgtgtaattagaaggtcaacta
ggatggatcatttgtgtacacataccttaattatttaggaattttgaatt
ttaccattttataatgtgaaatttataattgaatttataatttagcaaga
taaaataaaaaatattgtaaatttattgttgtagtaacatccttccaaag
tttcctgggaatatacaaagtgggtttaagactgagatgctataagtaga
caagaggaacttccctctgtctagatgtttgtataacttattctggaaaa
tgtaatattagtttctgtgtaaaatttaaagtttacttagttttgaagtg
aaaaaaaatctcagaacttacttcctggatgttgaaagaacaaaccataa
agatattatcttcacttttattatagtgtttcctatctattcctctatga
aatgatagttatggcatgatgcctcaagatgcaattgatgacttcattta
atataaattagatgtgtcctgctagagctgacttatagaacttaagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1264726_1265851
seq2: B6Ng01-211B04.b_47_1162

seq1  GAATTCAGCAGAAGTACCATTGTGGGAAGCAGCAAAGTTTTTGATTCTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCAGAAGTACCATTGTGGGAAGCAGCAAAGTTTTTGATTCTCT  50

seq1  AAGACAACAGATACACTGGCTAAATCTTCCAGGTACAACCACTTGGTAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAACAGATACACTGGCTAAATCTTCCAGGTACAACCACTTGGTAGC  100

seq1  ATTGAGTCTATTCTTAGCATGCAGCTTCTAGAAAAAAAGCATAAAGAATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAGTCTATTCTTAGCATGCAGCTTCTAGAAAAAAAGCATAAAGAATT  150

seq1  AAGCCATGTTTCCTCTGGACTTGACATGTCAGTATCACTAATGAGTCACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCATGTTTCCTCTGGACTTGACATGTCAGTATCACTAATGAGTCACA  200

seq1  TTCATGTCAAACAGTTTCATCACTGTTACAAGATGCCTAGCAACATAAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGTCAAACAGTTTCATCACTGTTACAAGATGCCTAGCAACATAAGT  250

seq1  GAAAGACAGGTCCATGGTCACATGATTATGAAAGGACATGAAGGAGCACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGACAGGTCCATGGTCACATGATTATGAAAGGACATGAAGGAGCACA  300

seq1  ATTGTTCAACTTATTAGCATCAAGTAAGCATCAACACAGGAAGGGACTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTCAACTTATTAGCATCAAGTAAGCATCAACACAGGAAGGGACTAA  350

seq1  AGTCAATAAACACCTTCCAAGATGTGTTCCAAATGATCAAGTTCCTTTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAATAAACACCTTCCAAGATGTGTTCCAAATGATCAAGTTCCTTTAC  400

seq1  AAGTTTCTCACCCCTTCTGTACACACCCATCAATTGACTAACTCATTGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTCTCACCCCTTCTGTACACACCCATCAATTGACTAACTCATTGAT  450

seq1  TAAAGCCCTCAGGGTCCAATCACTTTTCAGAGTGGATATTGTACTACCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCCCTCAGGGTCCAATCACTTTTCAGAGTGGATATTGTACTACCTA  500

seq1  TGAACATTGTATTGTGGATGAAAGCCTTCATCAAAGACCCATGACTGACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACATTGTATTGTGGATGAAAGCCTTCATCAAAGACCCATGACTGACA  550

seq1  TTTCAAACCCATTTCACCACAGCATTCTTTATTTGACAAAAAGTTATAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAACCCATTTCACCACAGCATTCTTTATTTGACAAAAAGTTATAGA  600

seq1  ATCCATCTATCTCTTCAAGGATATCTCTCTCTGGGAGTTCCAAATGGACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATCTATCTCTTCAAGGATATCTCTCTCTGGGAGTTCCAAATGGACA  650

seq1  ATGTCCAGGCCAACAGCATCAGAACCCCCAGGAACCTTCATAAATATGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCCAGGCCAACAGCATCAGAACCCCCAGGAACCTTCATAAATATGAG  700

seq1  TTCAAGTAGAAGAAAAATGCAATGCAAGTTTAGGGTCTTGAGCCTCCATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGTAGAAGAAAAATGCAATGCAAGTTTAGGGTCTTGAGCCTCCATC  750

seq1  CGTGCATCTTAAACCAATAAGGTGGAGCCAGAAGTTTAGGTCAGAAGTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGCATCTTAAACCAATAAGGTGGAGCCAGAAGTTTAGGTCAGAAGTCT  800

seq1  GAACTTCACCTATACTAAAACCAACTCTGAGGATTTCTAGCCATCTCCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTCACCTATACTAAAACCAACTCTGAGGATTTCTAGCCATCTCCAG  850

seq1  TTTCTGTCTGGTACTTAGTCACACCAAGTCTGCAGTAAGGCATATTGTGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTCTGGTACTTAGTCACACCAAGTCTGCAGTAAGGCATATTGTGT  900

seq1  AATATAAGATAGTGCCAGCAGTTGATTGTTAAAACCCACTATGTGTTGAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAAGATAGTGCCAGCAGTTGATTGTTAAAACCCACTATGTGTTGAC  950

seq1  TTGTATGTAAAATGAGAAATCTATAATATAGACACACACATACATACACA  1000
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TTGTATGTAAAATGAGAAATCTAT-ATATAGACACACACATACATACACA  999

seq1  CATACTCACAGAAAGAGGTAAGAAGTGGAGAAGCTGAGTCTTAGGAACCC  1050
      |||||||||||||||| |||   ||| ||| |||||||||||||  ||||
seq2  CATACTCACAGAAAGA-GTA--GAGT-GAG-AGCTGAGTCTTAG--ACCC  1042

seq1  CCAAGGAAGAGAGTGGAAATC-TTGTAAGGCACAGAGGTCAGTGAGAAAC  1099
      |||  | ||||||| |||||| |||||  |||||||||||||||||||||
seq2  CCA--GGAGAGAGT-GAAATCTTTGTA--GCACAGAGGTCAGTGAGAAAC  1087

seq1  TGTCTGTG-TCT--GTCTGGACAAAATCAG  1126
      |||||||| |||   ||||||| |||||||
seq2  TGTCTGTGTTCTTGTTCTGGAC-AAATCAG  1116

seq1: chrY_1389396_1390575
seq2: B6Ng01-211B04.g_62_1208 (reverse)

seq1  CCTTTAGTTCTTACTAAGTCAGCTCCTAAACCAGGGAACAACAAATACTA  50
      |||| ||||||   |||||||||||    | ||||     ||| || |||
seq2  CCTTAAGTTCT--ATAAGTCAGCTC---TAGCAGG-----ACACAT-CTA  39

seq1  ATTTATATTAAATATTAAAATGTCATCATATTTGCATCTCTGAGGCACTC  100
      |||||||||||||      | ||||||  | |||||||| ||||||| ||
seq2  ATTTATATTAAAT-----GAAGTCATC--AATTGCATCT-TGAGGCA-TC  80

seq1  ATTTCCCATAACCTATCAATTTCAATAAGAAGGAATAGATAGGAAACACT  150
      |  | |||||| ||||| ||||| |||   ||||||||||||||||||||
seq2  A--TGCCATAA-CTATC-ATTTC-ATA--GAGGAATAGATAGGAAACACT  123

seq1  ATAATTAAAAGTGAAGATAAATTATTCTTTATGGTTTTGTTCTTTCAACA  200
      |||| |||||||||||||||  || ||||||||| |||||||||||||||
seq2  ATAA-TAAAAGTGAAGATAA--TA-TCTTTATGG-TTTGTTCTTTCAACA  168

seq1  TTCCAGGAAGTAAGTTCTGAGATTTTTTTTCACTTCAAAACTAAGTAAAC  250
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -TCCAGGAAGTAAGTTCTGAGATTTTTTTTCACTTCAAAACTAAGTAAAC  217

seq1  TTTAAATTTTACACAGAAACTAATATTACATTTTCCAGAATAAGTTATAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATTTTACACAGAAACTAATATTACATTTTCCAGAATAAGTTATAC  267

seq1  AAACATCTAGACAGAGGGAAGTTCCTCTTGTCTACTTATAGCATCTCAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATCTAGACAGAGGGAAGTTCCTCTTGTCTACTTATAGCATCTCAGT  317

seq1  CTTAAACCCACTTTGTATATTCCCAGGAAACTTTGGAAGGATGTTACTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAACCCACTTTGTATATTCCCAGGAAACTTTGGAAGGATGTTACTAC  367

seq1  AACAATAAATTTACAATATTTTTTATTTTATCTTGCTAAATTATAAATTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATAAATTTACAATATTTTTTATTTTATCTTGCTAAATTATAAATTC  417

seq1  AATTATAAATTTCACATTATAAAATGGTAAAATTCAAAATTCCTAAATAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATAAATTTCACATTATAAAATGGTAAAATTCAAAATTCCTAAATAA  467

seq1  TTAAGGTATGTGTACACAAATGATCCATCCTAGTTGACCTTCTAATTACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGTATGTGTACACAAATGATCCATCCTAGTTGACCTTCTAATTACA  517

seq1  CAAAAAGTTTGTAAGAGACTATGGTTTTGCTTTAATTAGCTGGACAAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAGTTTGTAAGAGACTATGGTTTTGCTTTAATTAGCTGGACAAAAA  567

seq1  ATGAACTGATACCAGGTATAATAAATATAAATTCATGTCTGAAACAGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACTGATACCAGGTATAATAAATATAAATTCATGTCTGAAACAGAAA  617

seq1  GACAAGAAAGTCCTATTAACACCTATTAACATAAGAGTCACTTTAATGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAGAAAGTCCTATTAACACCTATTAACATAAGAGTCACTTTAATGTT  667

seq1  TCAAGTAAATTTCTTAATTTGCTTTAGACTTGTATGAGAAATAGCCAGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTAAATTTCTTAATTTGCTTTAGACTTGTATGAGAAATAGCCAGTT  717

seq1  TACCTAATCAAAAATTAAACACATTTTTTAATATTTTGTTTTAATATAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTAATCAAAAATTAAACACATTTTTTAATATTTTGTTTTAATATAAA  767

seq1  GTAGATGTCTTTATTTTTATGCAAATACATTAACTTTTTTATATGTACCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGATGTCTTTATTTTTATGCAAATACATTAACTTTTTTATATGTACCC  817

seq1  AATATTAAGCTTAAATTGTTTTATTTCTATATGTCTTACATAAGCATAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTAAGCTTAAATTGTTTTATTTCTATATGTCTTACATAAGCATAAG  867

seq1  TACCAAAGTATTAATGTTCAGGTTAGAGGACAACTTGTAAAAGGTGGTTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAAAGTATTAATGTTCAGGTTAGAGGACAACTTGTAAAAGGTGGTTC  917

seq1  TCAATTTCTGTCATGTTAGTGCCAGGAACTGAACTCAGGTTGCCATGGTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTTCTGTCATGTTAGTGCCAGGAACTGAACTCAGGTTGCCATGGTT  967

seq1  GGTATCAAGGGAATTTATAGAATGAGCATCTTATAAAAACCTTCAATAAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATCAAGGGAATTTATAGAATGAGCATCTTATAAAAACCTTCAATAAT  1017

seq1  ATATTAGAGTCAGGTCTTTGTTGTTGTTGTTTGGTTTTATGGGATAGTGT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAGAGTCAGGTCTTTGTTGTTGTTGTTTGGTTTTATGGGATAGTGT  1067

seq1  TTTATAAATCTAAGGCTATCATCCTATTAGTTACATAGTGACCAATTACT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAAATCTAAGGCTATCATCCTATTAGTTACATAGTGACCAATTACT  1117

seq1  TTGATTTTCTCATCCTCTGGTATTGAATTC  1180
      ||||||||||||||||||||||||||||||
seq2  TTGATTTTCTCATCCTCTGGTATTGAATTC  1147