BAC Information

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BAC

Clone NameB6Ng01-211F17
ChromosomeY (Build37)6 (Build37)
Map Location 370,508 - 371,69542,998,323 - 42,999,474
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100039202, Zfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y
Downstream geneTspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-211F17.bB6Ng01-211F17.g
ACCGA029445GA029446
length4541,140
definitionB6Ng01-211F17.b B6Ng01-211F17.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(370,508 - 371,695)(42,998,323 - 42,999,474)
sequence
gaattcattatgttgtaatcctggatatctggatttagagcataaacaaa
agagagaagctttgtgttcctacatttgaggacatgttcacatctaccaa
aagtatgtatttgtagtaaaaaataatcattttggtttgttttccaagac
agtattccctctgtagccctggctctcttggaactcattctgttgaccag
gctggccttgaactcagagctctgcctgtctctgcctcctgagtgctggc
attaaaggcatgcgccacgactgcctaaatgaaaagacacacagttttaa
aaagaagcttccaaacgctgacaccattgcatacactaacaagattttgc
tgaaagacccagatatggctgtctcttgtgagactatgccgggggctaac
aaacacagaagtggatactcacagtcagctattggatggatcacagggcc
caca
gaattctaattaaaacagcattgtcaagaataaacagttgcttcctgttt
agccattgcctgtaaaaggccagtgaacacaaactgaaacaaaggtgagt
cttcttgtttctgagacagtgatagtattgtcccagtgtttaaacatatt
catatacccagttatataaatctaagtataaaaccatgtaatacatttga
ggggacatccccagatttatggaaagtaaaacatttctaattaggcccag
tcctatcttgagaaagggagagcagtgatagcatgtataatgttgggctc
tattttggccctgctttgggccttgaggacaagcccgagccgtgctccag
ttttgaaaactctcagttgcttttgtactggagtgactcagcacaacctg
cttgagcctgcctttgtctagctactgctgatgtggaataactttgttag
ctttggatcccttgatacccttcctcacctttctcctttgcttatgtcat
ctcacctcaacaaaaaaaccccacctcctctctctgcccttttataaaaa
aaaggattgatacaattaagtgagttcctgcttcgacagacttctggctc
agggtaattattctctggaaggcaggagattaaaaaaaaagtttgaacaa
aaatgacctctgtataagtgcaacaaagatgtcccaacacttggtctcca
gttggtgatgctgtttggaaaggtttgggaatggcaaccttgtgggagga
aatgtgttactatagactggagagggatttgagattttaaagattccatg
ccacacttggctttgtgttgcagttcaagatgtgcacggtcctcttcctg
ctgttgccatgccatcctcaccattatggactccaaacttaaggccataa
gccaaaaataaacgtttatttgtttttgtataagttgccacagtcatggt
ggtggcacgtgtttgaatcaagttgtcaaaccttctgatctacagagacc
atcctcattcaactcttacagctctaggtctggtatcaacacctaaagct
acgtcatcatttatttttacttatgttcatttaagataaagccttaagtt
aaccaacattaaaggttaattgcgattttgtagaatgttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_370508_371695
seq2: B6Ng01-211F17.b_351_499

seq1  AGCTTCCAAACGCTGACACCATTGCATACACTAGCAAGATTTTGCTGAAA  50
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AGCTTCCAAACGCTGACACCATTGCATACACTAACAAGATTTTGCTGAAA  50

seq1  GGATCCAGATATAGCTGTCCCTTGTGAGACTATGCCAGGGCCTAGCAAAC  100
       || |||||||| |||||| |||||||||||||||| ||| ||| |||||
seq2  -GACCCAGATATGGCTGTCTCTTGTGAGACTATGCCGGGGGCTAACAAAC  99

seq1  ACAGAAGTGGATGCTCACAGTCAGCTATTGGATGGATCACAGGGCTCCCA  150
      |||||||||||| |||||||||||||||||||||||||||||||| | ||
seq2  ACAGAAGTGGATACTCACAGTCAGCTATTGGATGGATCACAGGGCCCACA  149

seq1  ATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGGAACTGCAACCCT  200
                                                        
seq2  --------------------------------------------------  149

seq1  ATAGTTGGAACAACATTATGAACTAACAAGGAGCACTTGACTCTAGCTGC  250
                                                        
seq2  --------------------------------------------------  149

seq1  ATATGTATGAAAAGATGGCCTAATCGGCCATCAGTGGAAAAAGAGGCCCA  300
                                                        
seq2  --------------------------------------------------  149

seq1  TTGGACTTGCAAACTTTATATGCCCCAGTACAGGGGAACTCCAGGGCCAA  350
                                                        
seq2  --------------------------------------------------  149

seq1  GAAGTGGGTGGGAGTGGGTGGGGGAGCGTGTGGGGGACTTTTGGGGTAGC  400
                                                        
seq2  --------------------------------------------------  149

seq1  ATTGGAAATGTAAATGAAATAAATACCCAATTTAAAAAAAAAAGCAAAAT  450
                                                        
seq2  --------------------------------------------------  149

seq1  TCAGTTTAAATAGCATTTGATGAGCATGCTCTTAAAAGGCCTGGTCCGAT  500
                                                        
seq2  --------------------------------------------------  149

seq1  GCTCATCGTCACCATCACACGCTCACCGTCACACACTCACTGTCACTCTT  550
                                                        
seq2  --------------------------------------------------  149

seq1  GCTGTGCTGCATGAAGGTGATGTTCAAAGATATGTAAGTTGTCTGGGTCA  600
                                                        
seq2  --------------------------------------------------  149

seq1  AGGTCCCTAAACACAGCTCTTTCTTCCTCTGGTTTCAAATGAAGACGCCA  650
                                                        
seq2  --------------------------------------------------  149

seq1  CTCAGGTGATGTGATTAATCAATTTTGTTTAGAGTCAGGGATGATATTAA  700
                                                        
seq2  --------------------------------------------------  149

seq1  CACCACTCTCCCACCCTCATGACGCAGGCACAGGGCATGTATGAGCCATA  750
                                                        
seq2  --------------------------------------------------  149

seq1  GCAGACAGAAGTAGCTATGTTACTGTTTAGGACACACAGAGATTCACATG  800
                                                        
seq2  --------------------------------------------------  149

seq1  TGTGAGAAATGATGAGTATATCATTTATTGTACAATGCTTTACATTTTTA  850
                                                        
seq2  --------------------------------------------------  149

seq1  TTCCACTTTAATCTATCTACTTAGCTCTTTGCTTCTTGACTATGCAGGAC  900
                                                        
seq2  --------------------------------------------------  149

seq1  TGTGACCAGCGACTTCAAGCCCCTGCTGCAGTGACGTCCCCAGGAGATGT  950
                                                        
seq2  --------------------------------------------------  149

seq1  ACTAACCTTAAACTGTGAGTCACAATAAACCCATTCTTCCCTGCACTGCC  1000
                                                        
seq2  --------------------------------------------------  149

seq1  ATTATCAGGGCATTTTGTTACAGCAACAAGAAAAGTAACCAAGACAGATT  1050
                                                        
seq2  --------------------------------------------------  149

seq1  CTGAAAGAAACCTAAGCATCCCAAATCCGAAGCGGACTGACACCGTGACA  1100
                                                        
seq2  --------------------------------------------------  149

seq1  GAAAGCCACCTCTGAGACAAGTGAACATGTAAGGCAAACAGGGGCATACT  1150
                                                        
seq2  --------------------------------------------------  149

seq1  ATGCAACACTCTTATTAAAAGGCAGGACACAAACCACA  1188
                                            
seq2  --------------------------------------  149

seq1: chr6_42998323_42999474
seq2: B6Ng01-211F17.g_64_1203

seq1  GAATTCTAATTAAAACAGCATTGTCAAGAATAAACAGTTGCTTCCTGTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAATTAAAACAGCATTGTCAAGAATAAACAGTTGCTTCCTGTTT  50

seq1  AGCCATTGCCTGTAAAAGGCCAGTGAACACAAACTGAAACAAAGGTGAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATTGCCTGTAAAAGGCCAGTGAACACAAACTGAAACAAAGGTGAGT  100

seq1  CTTCTTGTTTCTGAGACAGTGATAGTATTGTCCCAGTGTTTAAACATATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTGTTTCTGAGACAGTGATAGTATTGTCCCAGTGTTTAAACATATT  150

seq1  CATATACCCAGTTATATAAATCTAAGTATAAAACCATGTAATACATTTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATACCCAGTTATATAAATCTAAGTATAAAACCATGTAATACATTTGA  200

seq1  GGGGACATCCCCAGATTTATGGAAAGTAAAACATTTCTAATTAGGCCCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGACATCCCCAGATTTATGGAAAGTAAAACATTTCTAATTAGGCCCAG  250

seq1  TCCTATCTTGAGAAAGGGAGAGCAGTGATAGCATGTATAATGTTGGGCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTATCTTGAGAAAGGGAGAGCAGTGATAGCATGTATAATGTTGGGCTC  300

seq1  TATTTTGGCCCTGCTTTGGGCCTTGAGGACAAGCCCGAGCCGTGCTCCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTGGCCCTGCTTTGGGCCTTGAGGACAAGCCCGAGCCGTGCTCCAG  350

seq1  TTTTGAAAACTCTCAGTTGCTTTTGTACTGGAGTGACTCAGCACAACCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAAAACTCTCAGTTGCTTTTGTACTGGAGTGACTCAGCACAACCTG  400

seq1  CTTGAGCCTGCCTTTGTCTAGCTACTGCTGATGTGGAATAACTTTGTTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGCCTGCCTTTGTCTAGCTACTGCTGATGTGGAATAACTTTGTTAG  450

seq1  CTTTGGATCCCTTGATACCCTTCCTCACCTTTCTCCTTTGCTTATGTCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGATCCCTTGATACCCTTCCTCACCTTTCTCCTTTGCTTATGTCAT  500

seq1  CTCACCTCAACAAAAAAACCCCACCTCCTCTCTCTGCCCTTTTATAAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACCTCAACAAAAAAACCCCACCTCCTCTCTCTGCCCTTTTATAAAAA  550

seq1  AAAGGATTGATACAATTAAGTGAGTTCCTGCTTCGACAGACTTCTGGCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGATTGATACAATTAAGTGAGTTCCTGCTTCGACAGACTTCTGGCTC  600

seq1  AGGGTAATTATTCTCTGGAAGGCAGGAGATTAAAAAAAAAGTTTGAACAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTAATTATTCTCTGGAAGGCAGGAGATTAAAAAAAAAGTTTGAACAA  650

seq1  AAATGACCTCTGTATAAGTGCAACAAAGATGTCCCAACACTTGGTCTCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGACCTCTGTATAAGTGCAACAAAGATGTCCCAACACTTGGTCTCCA  700

seq1  GTTGGTGATGCTGTTTGGAAAGGTTTGGGAATGGCAACCTTGTGGGAGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGTGATGCTGTTTGGAAAGGTTTGGGAATGGCAACCTTGTGGGAGGA  750

seq1  AATGTGTTACTATAGACTGGAGAGGGATTTGAGATTTTAAAGATTCCATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGTTACTATAGACTGGAGAGGGATTTGAGATTTTAAAGATTCCATG  800

seq1  CCACACTTGGCTTTGTGTTGCAGTTCAAGATGTGCACGGTCCTCTTCCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACTTGGCTTTGTGTTGCAGTTCAAGATGTGCACGGTCCTCTTCCTG  850

seq1  CTGTTGCCATGCCATCCTCACCATTATGGACTCCAAACTTAAGGGCCATA  900
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CTGTTGCCATGCCATCCTCACCATTATGGACTCCAAACTTAA-GGCCATA  899

seq1  AGCCAAAAATAAACGTTTATTTGTTTTTGTATAAGTTGCCACAGTCATGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAAAAATAAACGTTTATTTGTTTTTGTATAAGTTGCCACAGTCATGG  949

seq1  T-GTGGCACGTGTTTGAATCAAGTGTTCAAACC-TCTGATCTACAGAGAC  998
      | ||||||||||||||||||||||  ||||||| ||||||||||||||||
seq2  TGGTGGCACGTGTTTGAATCAAGTTGTCAAACCTTCTGATCTACAGAGAC  999

seq1  CATCCTCATTCAAACTCTTACAGCCTCTAAGTCTGGTTATTCAACACCTA  1048
      ||||||||||| ||||||||||| ||||| |||||||   ||||||||||
seq2  CATCCTCATTC-AACTCTTACAG-CTCTAGGTCTGGT--ATCAACACCTA  1045

seq1  AAAGGCTACGTCAATCATTTATTTTTAACTTAATGTTTCATTT-AGATAA  1097
      ||  |||||||| ||||||||||||| |||| ||| ||||||| ||||||
seq2  AA--GCTACGTC-ATCATTTATTTTT-ACTT-ATG-TTCATTTAAGATAA  1089

seq1  AG-CTTAAGTAAAACCAAACATTTAAAGTAAATGCCGATTTTGTTAAGAA  1146
      || ||||||| ||  | |||||| || || |||  |||||||||  ||||
seq2  AGCCTTAAGTTAA--CCAACATTAAAGGTTAATTGCGATTTTGT--AGAA  1135

seq1  TAGTTT  1152
      | ||||
seq2  T-GTTT  1140