BAC Information

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BAC

Clone NameB6Ng01-220O06
Chromosome8 (Build37)Y (Build37)
Map Location 107,776,294 - 107,777,4642,430,627 - 2,430,680
singlet/doubletsingletsinglet
Overlap geneD230025D16Rik, C76566
Upstream geneCklf, Cmtm2a, Cmtm2b, Cmtm3, Cmtm4, Dync1li2, Ccdc79, Appbp1, Car7, LOC628007, 4833426J09Rik, Cdh16, Rrad, 1110019N10Rik, EG637550, LOC382052, LOC100041473, Ces6, LOC628050, 4932416K20Rik, BC015286, Matr3-ps2, Ces2, LOC667754, LOC667760, Ces5, 2310038E17Rik, 2210023G05Rik, LOC436058, EG436059, Es31, EG13909, LOC667774, BC026374, LOC100042408, Cbfb
Downstream geneTradd, Fbxl8, Hsf4, Nol3, 4931428F04Rik, Exoc3l, E2f4, Elmo3, Lrrc29, Hspc171, Fhod1, Slc9a5, Plekhg4, Kctd19, Lrrc36, 2700055K07Rik, Zdhhc1, LOC667837, Hsd11b2, Atp6v0d1, Agrp, EG667846, 2310066E14Rik, LOC546100, Ctcf, EG546101, D130029J02Rik, Acd, Pard6a, E130303B06Rik, 4933405L10Rik, Gfod2, Ranbp10, Tsnaxip1, Cenpt, LOC100041617, Thap11, Nutf2, Edc4, Nrn1l, Pskh1, Ctrl, Psmb10, Lcat, Slc12a4, Dpep3, Dpep2, Ddx28, Dus2l, Nfatc3, Rbm35b, Lypla3, Slc7a6, Slc7a6os, Prmt7, Smpd3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-220O06.bB6Ng01-220O06.g
ACCGA036335GA036336
length1,161299
definitionB6Ng01-220O06.b B6Ng01-220O06.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(107,776,294 - 107,777,464)(2,430,627 - 2,430,680)
sequence
gaattcttagttatctctcacggtatcaaacttctcttactcagctgcag
gacagaacatgaaagaacccaaaggggttttccatgtgggtttatggtgt
acatgacttttctccagatcactcactgagagagctagggctgggatgaa
acaaacacaagtggatatacccatagccaggcctcagccctcgtggacct
ggcaggcattttcgtatagttactagcttccttccttctctcattggatt
cccagtggccatatcttatctgttccctttgaggtctggtgttagagcta
actaagcccttcaggtcgaggtttgcctgtagcatgtggggcggggccat
catgtgtcaccgtcttgcccactatacacacacacacaaaaccatgccag
tgtacttctgaagggtgacccatccccctcccggaaggagtcctaagatt
cctccactataagattgctcatattcttcaactccagcttcaaggaaatc
aacagctcacattttagtacaaacagcccagtggcagcacatggcacgct
gtcactgtgggcataggtgctttattggaagggggacgaggaagtctcct
ctgatcacgaggatgggaagagtcctggctaccctgacagtgggatgtgc
agggtctctggccagacgaaggtccaaatgggaagacacctgtcaaatca
gtcatgggagtgccacacaggcctggctgtaggcccaggaaccatacaga
cagctggggcaggtcccctgcacattcatcatgaactatacaagatgagg
ctgtacatgagttaatttacaaaagtcattatttacaaaaatctgtacac
acatttgaaaaactcacaaaattgtcatctatgtatcacaagttgctaga
ccaaaatattaaaaatgggataaaattatatgttttctcttcttcaattc
ttttcaaaaggattactattttaaagcaccatatatgcttactttcccaa
ttagcaagactcatgtagaaaccaagcagcctagtgtcctgagctctagc
ctcaaacagtagcaggcaagtcaagcagtgccagaactagggcaggaact
gtccccagtgcataacagattgctgtcatgtacaaagggagaaggttctt
tgctaacactt
tggggattttcagaatatatatgtaaatgctagaccctgatcgaagggac
tggttggctggttggtggttgaatgctgttggttgctgtttgtcaagttg
tagtgtatgaagagacaaaaataagtaattcgatatcctaatggcaaagc
ttgaacttgccccaaggacctctttgtcccctaatcagcaggaggtagtc
taatgatgtcatcacttcctttcctaccccctgactttatttgagtctct
ctctctctctctctctctctctctctctctctctctctctctctttctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_107776294_107777464
seq2: B6Ng01-220O06.b_44_1204 (reverse)

seq1  AAGTGTTAGCCAAAGACACCTTCCTCCTTTTGTTACATTACAGCATTCTG  50
      ||||||||| |||||| ||||| |||| |||| ||||| |||||| ||||
seq2  AAGTGTTAG-CAAAGA-ACCTT-CTCCCTTTG-TACATGACAGCAATCTG  46

seq1  TTATGCACTGTGGGCCAGCTCCTTGCCCTAGTTCTGGGCACTGGCCTGGC  100
      |||||||||| ||| ||| ||| |||||||||||| |||||||  || | 
seq2  TTATGCACTG-GGGACAGTTCC-TGCCCTAGTTCT-GGCACTG--CTTGA  91

seq1  CTGGCCTGGCTACTTGGTTTGAGGCCTAGAGGCTCAAGGAACACTAGGCT  150
      || |||| ||||||  |||||||| ||||| |||||  | ||||||||||
seq2  CTTGCCT-GCTACT--GTTTGAGG-CTAGA-GCTCA--GGACACTAGGCT  134

seq1  GCTTGGTTTCTTACATGGGTCTTGCTAAT--GGGAAGT-AGCATATAT-G  196
      |||||||||| |||||| |||||||||||  || |||| ||||||||| |
seq2  GCTTGGTTTC-TACATGAGTCTTGCTAATTGGGAAAGTAAGCATATATGG  183

seq1  TGCTTTAAAATAGTAATCCTTTTGAAAAGAATTG-AGAAGAG-AAACATA  244
      |||||||||||||||||||||||||||||||||| ||||||| |||||||
seq2  TGCTTTAAAATAGTAATCCTTTTGAAAAGAATTGAAGAAGAGAAAACATA  233

seq1  TAATTTTATCCCATTTTTAATATTTTGGTCTAGCAACTTGTGATACATAG  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTATCCCATTTTTAATATTTTGGTCTAGCAACTTGTGATACATAG  283

seq1  ATGACAATTTTGTGAGTTTTTCAAATGTGTGTACAGATTTTTGTAAATAA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACAATTTTGTGAGTTTTTCAAATGTGTGTACAGATTTTTGTAAATAA  333

seq1  TGACTTTTGT-AATTAACTCATGTACAGCCTCATCTTGTATAGTTCATGA  393
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TGACTTTTGTAAATTAACTCATGTACAGCCTCATCTTGTATAGTTCATGA  383

seq1  TGAATGTGCAGGGGACCTGCCCCAGCTGTCTGTATGGTTCCTGGGCCTAC  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGTGCAGGGGACCTGCCCCAGCTGTCTGTATGGTTCCTGGGCCTAC  433

seq1  AGCCAGGCCTGTGTGGCACTCCCATGACTGATTTGACAGGTGTCTTCCCA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGGCCTGTGTGGCACTCCCATGACTGATTTGACAGGTGTCTTCCCA  483

seq1  TTTGGACCTTCGTCTGGCCAGAGACCCTGCACATCCCACTGTCAGGGTAG  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGACCTTCGTCTGGCCAGAGACCCTGCACATCCCACTGTCAGGGTAG  533

seq1  CCAGGACTCTTCCCATCCTCGTGATCAGAGGAGACTTCCTCGTCCCCCTT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGACTCTTCCCATCCTCGTGATCAGAGGAGACTTCCTCGTCCCCCTT  583

seq1  CCAATAAAGCACCTATGCCCACAGTGACAGCGTGCCATGTGCTGCCACTG  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATAAAGCACCTATGCCCACAGTGACAGCGTGCCATGTGCTGCCACTG  633

seq1  GGCTGTTTGTACTAAAATGTGAGCTGTTGATTTCCTTGAAGCTGGAGTTG  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTTTGTACTAAAATGTGAGCTGTTGATTTCCTTGAAGCTGGAGTTG  683

seq1  AAGAATATGAGCAATCTTATAGTGGAGGAATCTTAGGACTCCTTCCGGGA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATATGAGCAATCTTATAGTGGAGGAATCTTAGGACTCCTTCCGGGA  733

seq1  GGGGGATGGGTCACCCTTCAGAAGTACACTGGCATGGTTTTGTGTGTGTG  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGATGGGTCACCCTTCAGAAGTACACTGGCATGGTTTTGTGTGTGTG  783

seq1  TGTATAGTGGGCAAGACGGTGACACATGATGGCCCCGCCCCACATGCTAC  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATAGTGGGCAAGACGGTGACACATGATGGCCCCGCCCCACATGCTAC  833

seq1  AGGCAAACCTCGACCTGAAGGGCTTAGTTAGCTCTAACACCAGACCTCAA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAAACCTCGACCTGAAGGGCTTAGTTAGCTCTAACACCAGACCTCAA  883

seq1  AGGGAACAGATAAGATATGGCCACTGGGAATCCAATGAGAGAAGGAAGGA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAACAGATAAGATATGGCCACTGGGAATCCAATGAGAGAAGGAAGGA  933

seq1  AGCTAGTAACTATACGAAAATGCCTGCCAGGTCCACGAGGGCTGAGGCCT  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAGTAACTATACGAAAATGCCTGCCAGGTCCACGAGGGCTGAGGCCT  983

seq1  GGCTATGGGTATATCCACTTGTGTTTGTTTCATCCCAGCCCTAGCTCTCT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTATGGGTATATCCACTTGTGTTTGTTTCATCCCAGCCCTAGCTCTCT  1033

seq1  CAGTGAGTGATCTGGAGAAAAGTCATGTACACCATAAACCCACATGGAAA  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGAGTGATCTGGAGAAAAGTCATGTACACCATAAACCCACATGGAAA  1083

seq1  ACCCCTTTGGGTTCTTTCATGTTCTGTCCTGCAGCTGAGTAAGAGAAGTT  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCTTTGGGTTCTTTCATGTTCTGTCCTGCAGCTGAGTAAGAGAAGTT  1133

seq1  TGATACCGTGAGAGATAACTAAGAATTC  1171
      ||||||||||||||||||||||||||||
seq2  TGATACCGTGAGAGATAACTAAGAATTC  1161

seq1: chrY_2430627_2430680
seq2: B6Ng01-220O06.g_318_371

seq1  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTT  50

seq1  TCTC  54
      ||||
seq2  TCTC  54