BAC Information

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BAC

Clone NameB6Ng01-223L01
ChromosomeY (Build37)
Map Location 373,692 - 374,786
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039202, Zfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y
Downstream geneTspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-223L01.bB6Ng01-223L01.g
ACCGA038357GA038358
length1,1371,089
definitionB6Ng01-223L01.b B6Ng01-223L01.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcatgggcagccttcactttaatattattggcaacatctaatatct
ggatattaagctgtctcctactaggtcttgacaggtcaccaaatactggt
ttaatcaaggaagaaggaaagagaaggagcagcaaatagataagaatgat
aagtactaagaacactggcaaaaatgacatcacaaggtgcttgcaccaac
gaagcaggccttgggtcctctcagtactcatactgggtccacaagaggac
agtgtctcacattctgaaacacagtacctccggcaggtttttttccttgt
cattaggagtcccaggcataatgagtttaatatggggtgtcaccagcact
gagtaactgatattaaagtcctgttctaccaggccccactgtaagttttt
acattcccaactcggatttttagtaaaataattatcagcttatatttata
tttggcaagtcctcttgtgcaaggcatttgtttaaattaagttgaggcat
tatttgttctcagtgaattcaggtgagttaaatgtgggtaacatgcttct
tatgtataattattgggatatgcagagccaaagactgtatgttccaagga
attgttttgtactcaaaacttttaaataaacttacatgatgtactggcta
ttcctggttgtcaacttgactatatttgaaatgaactacaatccagaatt
ggaatgctcaccagtgaccctaatctggaggctgggagatagaagttctg
gatcttgaagacaggaagatctcagagttcaagatcatctgggattaaag
gtgtggtggcactcacactgacacacccttttaatctgggctacaccttc
tgcaggagaccatataaggacattggaagaagggagtcttgctctttagc
ctgcttgccatgtgggactgaacaactgctagatccttggaactaccatt
tcacagctgctgcttgaaccattgttgggaactggactacagactgttaa
gtcatcaatgaattcctttactaatagaactatctgtaggttctgtgact
ctagagacctggactaatacatagttggtaccaatgaactgaggttttgc
tgtgatagccctgacttatgcttttatttaaaagaat
gaattccttgttccaaacagcaattggttattgcaaaatattgatatttg
acttattacataccatcattttaaataaaattgatactcatcctaaaaat
aagttaaaaattgcttatgcatgcttttgtatcttctataaattcatgca
tgcatatatcccatttactgtatttaaaaacaacccttctatgagaaaaa
agtatatgtgaattggatcacatgtttattcttttgagtttccacctgct
tcagcacagataattaaattatgtgctgtagatggtgttttaaaatgttg
aagattgcctggaaaagacctcttaaggcaatgccacgctagatttatat
cccaggtagattatggatcttatacaaatataattggccatataatttca
ttctttacatcatcaaattagtaatggcttaaaataataatttggtactt
taaataaataaataaatgtgcatgtcatattgtaaagatttactctcagt
gtcctcagtttctacctgttccacacattggtgttaattctcgaggactt
atacttaatcaattattgcaaatggatactcatttttaatttaaaaaaaa
tatatgcacatatgactattgatacctttttagtctttctaattacaact
actttaacaagaaaagcaactaaaagtatagttagtcattgcctgtgttg
atttttttttttttttgcttgcttggtgttctaaatcaaattaaaactgg
ctattacagccaaagatttgagatgtgttgtcaacaatttaacggtacac
atgttactgagatattttataattctcaaagacaaggtattgtaaaactt
taaaaactataccttctataaaaacaaagaaagggggaaattatatccct
gtgcacattgtttaagtaacattttttatttaaaaacaaaaaaactagat
tattagtgtctaggacagataaaaggatccacttattggcaacatgccat
gatcctgttcagatacctaatatggggaagggggatgttcctgttttcca
cagtatgctactgagccatgctagcttcaatgttgcaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_373692_374786
seq2: B6Ng01-223L01.b_83_1181 (reverse)

seq1  ATTCTTTTAAATAAAAGCAT-AGTCAGGCCTATCACAGCAATACCTCAG-  48
      |||||||||||||||||||| ||||||| |||||||||||| ||||||| 
seq2  ATTCTTTTAAATAAAAGCATAAGTCAGGGCTATCACAGCAAAACCTCAGT  50

seq1  TCCCTGGTACCAACTTATGTATTAGTCAGGGTTCTCTAGAGTCACAGAAC  98
      ||  |||||||||| ||||||||||||  || ||||||||||||||||||
seq2  TCATTGGTACCAAC-TATGTATTAGTCCAGG-TCTCTAGAGTCACAGAAC  98

seq1  TTACAGATAG-TCTATTAGTAAAGGAATTCATTGATGACTTAACAGTCTG  147
       ||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CTACAGATAGTTCTATTAGTAAAGGAATTCATTGATGACTTAACAGTCTG  148

seq1  TAGTCCAGTTCCCAACAATGGTTC-AGCAGCAGCTGTG-AATGGTAG-TC  194
      |||||||||||||||||||||||| ||||||||||||| |||||||| ||
seq2  TAGTCCAGTTCCCAACAATGGTTCAAGCAGCAGCTGTGAAATGGTAGTTC  198

seq1  CAAGGATCTAGCAGTTGTTCAGTCCCACATGGCAAGCAGGCTAAAGAGCA  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGATCTAGCAGTTGTTCAGTCCCACATGGCAAGCAGGCTAAAGAGCA  248

seq1  AGACTCCCTTCTTCCAATGTCCTTATATGGTCTCCTGCAGAAGGTGTAGC  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCCCTTCTTCCAATGTCCTTATATGGTCTCCTGCAGAAGGTGTAGC  298

seq1  CCAGATTAAAAGGGTGTGTCAGTGTGAGTGCCACCACACCTTTAATCCCA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATTAAAAGGGTGTGTCAGTGTGAGTGCCACCACACCTTTAATCCCA  348

seq1  GATGATCTTGAACTCTGAGATCTTCCTGTCTTCAAGATCCAGAACTTCTA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGATCTTGAACTCTGAGATCTTCCTGTCTTCAAGATCCAGAACTTCTA  398

seq1  TCTCCCAGCCTCCAGATTAGGGTCACTGGTGAGCATTCCAATTCTGGATT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCAGCCTCCAGATTAGGGTCACTGGTGAGCATTCCAATTCTGGATT  448

seq1  GTAGTTCATTTCAAATATAGTCAAGTTGACAACCAGGAATAGCCAGTACA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTTCATTTCAAATATAGTCAAGTTGACAACCAGGAATAGCCAGTACA  498

seq1  TCATGTAAGTTTATTTAAAAGTTTTGAGTACAAAACAATTCCTTGGAACA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTAAGTTTATTTAAAAGTTTTGAGTACAAAACAATTCCTTGGAACA  548

seq1  TACAGTCTTTGGCTCTGCATATCCCAATAATTATACATAAGAAGCATGTT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTCTTTGGCTCTGCATATCCCAATAATTATACATAAGAAGCATGTT  598

seq1  ACCCACATTTAACTCACCTGAATTCACTGAGAACAAATAATGCCTCAACT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACATTTAACTCACCTGAATTCACTGAGAACAAATAATGCCTCAACT  648

seq1  TAATTTAAACAAATGCCTTGCACAAGAGGACTTGCCAAATATAAATATAA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTAAACAAATGCCTTGCACAAGAGGACTTGCCAAATATAAATATAA  698

seq1  GCTGATAATTATTTTACTAAAAATCCGAGTTGGGAATGTAAAAACTTACA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGATAATTATTTTACTAAAAATCCGAGTTGGGAATGTAAAAACTTACA  748

seq1  GTGGGGCCTGGTAGAACAGGACTTTAATATCAGTTACTCAGTGCTGGTGA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGCCTGGTAGAACAGGACTTTAATATCAGTTACTCAGTGCTGGTGA  798

seq1  CACCCCATATTAAACTCATTATGCCTGGGACTCCTAATGACAAGGAAAAA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCCATATTAAACTCATTATGCCTGGGACTCCTAATGACAAGGAAAAA  848

seq1  AACCTGCCGGAGGTACTGTGTTTCAGAATGTGAGACACTGTCCTCTTGTG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGCCGGAGGTACTGTGTTTCAGAATGTGAGACACTGTCCTCTTGTG  898

seq1  GACCCAGTATGAGTACTGAGAGGACCCAAGGCCTGCTTCGTTGGTGCAAG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCAGTATGAGTACTGAGAGGACCCAAGGCCTGCTTCGTTGGTGCAAG  948

seq1  CACCTTGTGATGTCATTTTTGCCAGTGTTCTTAGTACTTATCATTCTTAT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTGTGATGTCATTTTTGCCAGTGTTCTTAGTACTTATCATTCTTAT  998

seq1  CTATTTGCTGCTCCTTCTCTTTCCTTCTTCCTTGATTAAACCAGTATTTG  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTGCTGCTCCTTCTCTTTCCTTCTTCCTTGATTAAACCAGTATTTG  1048

seq1  GTGACCTGTCAAGACCTAGTAGGAGACAGCTTAATATCCAGATATTAGAT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACCTGTCAAGACCTAGTAGGAGACAGCTTAATATCCAGATATTAGAT  1098

seq1  G  1095
      |
seq2  G  1099