BAC Information

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BAC

Clone NameB6Ng01-231F16
ChromosomeY (Build37)5 (Build37)
Map Location 2,073,004 - 2,073,06127,361,417 - 27,362,316
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228
Downstream geneLOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236, EG631479, LOC667244, LOC100039652
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-231F16.bB6Ng01-231F16.g
ACCGA043977GA043978
length228901
definitionB6Ng01-231F16.b B6Ng01-231F16.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(2,073,004 - 2,073,061)(27,361,417 - 27,362,316)
sequence
gaattctttcccagcactcacattaggcaggtcaactcacaactgcctag
tacttctgatgccctcttctggcctctgtgggtacctgccctcacatgca
catatccacatagacacagacatacacaccccatacaaacatgtagataa
ataataaatctttaaaaatattaaaaacaaaaatgactctctctctctct
ctctctctctctgtgtgtgtgtgtgtgt
gaattcactgtaaacctaggaggctgtcaacaatagaaaacttaatttaa
acactgcaaaccactcagggggggttctgggctacacctcctgtaagact
atcattactatcatcacttggcaactcattttcctaacttcttggtatgt
gcttccagggaggtacatgacataagaaagtgtgaagcagtgggtgttga
ttttgcacttaactaacccactcatagagtagtcaggaaccttaagatct
aacgctaccaacagagtatctttaaaactgctaactaagagggcacacga
aagaactggaacaatacgactaccctcaccaagccgagactgcttttatt
aatctgcacgaccttggtgagactgcttttattaatctgtacgaccttgg
ttcaaagtcaacccctgttggaggccctggatctcttaatgttctagttc
tctgatgcatccccaggtcataggagtaagtacatattttttttttaaat
cttgaaattaaattgaaaatcttttttttccctccaaaatgaatcaataa
tctttatcatattctgaaaaatcacactcgctgagaagccaatttagatg
ccgctactctcgtcgctctccagggtcctgagtttattttctctttttct
ctgagagttagctctccccacatccacatccagctccttggttgattctg
attgcctgttttcgctttgtaaccattcttgaattagtaagaacataatg
caatacacgctcatttgttttaaataatctcaaaatatcctctcagttta
caccgactgctacacccagtaccccctaacctcaagcaaggtctgtatct
cttccaccaaatgtcccagtgaataccaatgactgaatatattggactgc
c
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_2073004_2073061
seq2: B6Ng01-231F16.b_229_270

seq1  CTCTCTCTCTTTCTCTCTCTCTCTCTGTCCTTCTGTGTGTCTATAAGTGA  50
      |||||||||| ||||||||||||||||      |||||||          
seq2  CTCTCTCTCTCTCTCTCTCTCTCTCTG------TGTGTGT----------  34

seq1  GTGTGTGT  58
      ||||||||
seq2  GTGTGTGT  42

seq1: chr5_27361417_27362316
seq2: B6Ng01-231F16.g_67_967

seq1  GAATTCACTGTAAACCTAGGAGGCTGTCAACAATAGAAAACTTAATTTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGTAAACCTAGGAGGCTGTCAACAATAGAAAACTTAATTTAA  50

seq1  ACACTGCAAACCAATCAGTGGGGGTTCTGGGCTACACGTCATGTAAGACT  100
      ||||||||||||| |||| |||||||||||||||||| || |||||||||
seq2  ACACTGCAAACCACTCAGGGGGGGTTCTGGGCTACACCTCCTGTAAGACT  100

seq1  ATCATTACTATCATCACTTGGCAGCTCAGTTTCCTAGCTTCTTGGTATGT  150
      ||||||||||||||||||||||| |||| ||||||| |||||||||||||
seq2  ATCATTACTATCATCACTTGGCAACTCATTTTCCTAACTTCTTGGTATGT  150

seq1  GCTTCCAGGGAGGTACATGACAGAAGAAAGTGTGAAGCAGTGGGTGTTGA  200
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GCTTCCAGGGAGGTACATGACATAAGAAAGTGTGAAGCAGTGGGTGTTGA  200

seq1  TTTTGCAGTTAACTAACCCACTCAGAGAGTAGTCAGGAACCTTAAGATCT  250
      ||||||| |||||||||||||||| |||||||||||||||||||||||||
seq2  TTTTGCACTTAACTAACCCACTCATAGAGTAGTCAGGAACCTTAAGATCT  250

seq1  AACGCTACCAACAGAGTAGCTTTAAAACTGCTAACTAAGAGGGCACACGA  300
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  AACGCTACCAACAGAGTATCTTTAAAACTGCTAACTAAGAGGGCACACGA  300

seq1  AAGAACTGGAACAATACAGCTACCCACACCAAGCCGAGACTGCTTTTATT  350
      |||||||||||||||||  |||||| ||||||||||||||||||||||||
seq2  AAGAACTGGAACAATACGACTACCCTCACCAAGCCGAGACTGCTTTTATT  350

seq1  AATCTGCAGGACCTTGGTGAGACTGCTTTTATTAATCTGTAGGACCTTGG  400
      |||||||| |||||||||||||||||||||||||||||||| ||||||||
seq2  AATCTGCACGACCTTGGTGAGACTGCTTTTATTAATCTGTACGACCTTGG  400

seq1  TTCAAAGTCAACCCCTGTTGGAGGCCCTGGATCTCTTAATGTTCTAGTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAGTCAACCCCTGTTGGAGGCCCTGGATCTCTTAATGTTCTAGTTC  450

seq1  TCTGATGCATCCCCAGGTCATAGGAGAAGGTACATATTTTTTTTTTAAAT  500
      |||||||||||||||||||||||||| | |||||||||||||||||||||
seq2  TCTGATGCATCCCCAGGTCATAGGAGTAAGTACATATTTTTTTTTTAAAT  500

seq1  CTTGAAATTAAATTGTAAATCTTTTTTTTCCCTCCAAAATGAATCAATAA  550
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CTTGAAATTAAATTGAAAATCTTTTTTTTCCCTCCAAAATGAATCAATAA  550

seq1  TCTTTATCAGATTCTGAAAAATCACACTCTCTGAGAAGCCAATTTAGATG  600
      ||||||||| ||||||||||||||||||| ||||||||||||||||||||
seq2  TCTTTATCATATTCTGAAAAATCACACTCGCTGAGAAGCCAATTTAGATG  600

seq1  CAGCAGCTCAGGTCGCTCTCCAGGGTCCTGAGTTTATTTTCTCTTTTTCT  650
      | ||  |||  |||||||||||||||||||||||||||||||||||||||
seq2  CCGCTACTCTCGTCGCTCTCCAGGGTCCTGAGTTTATTTTCTCTTTTTCT  650

seq1  CTGAGAGTTAGCTCTCCCCACATCCACATCCAGCTCCTTGGTTGTTTTTG  700
      |||||||||||||||||||||||||||||||||||||||||||| || ||
seq2  CTGAGAGTTAGCTCTCCCCACATCCACATCCAGCTCCTTGGTTGATTCTG  700

seq1  TTTGCCTGTTTTTGTTTTGTTTTTCATTCTTTAATTAGTAAGAAGATAAT  750
       ||||||||||| | |||| |   ||||||| |||||||||||| |||||
seq2  ATTGCCTGTTTTCGCTTTG-TAACCATTCTTGAATTAGTAAGAACATAAT  749

seq1  GCAATACAGGCTCAATTGTTTTAAATAATCTAAGAATATCCTCACAGTTG  800
      |||||||| ||||| |||||||||||||||| | ||||||||| ||||| 
seq2  GCAATACACGCTCATTTGTTTTAAATAATCTCAAAATATCCTCTCAGTTT  799

seq1  AGACCTACTGCTAC-CCCAGTA-CCTCTAACCTCAAGCCAGTTCTGTATC  848
      | ||| |||||||| ||||||| || |||||||||||| || ||||||||
seq2  ACACCGACTGCTACACCCAGTACCCCCTAACCTCAAGCAAGGTCTGTATC  849

seq1  TCACCCACC-AATGGCCCAGTGGATACAAAAAGACTGAAAATATTCAACT  897
      ||  ||||| |||| ||||||| ||||  || ||||||| |||||  |||
seq2  TCTTCCACCAAATGTCCCAGTGAATAC-CAATGACTGAATATATTGGACT  898

seq1  GCC  900
      |||
seq2  GCC  901