BAC Information

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BAC

Clone NameB6Ng01-234B15
ChromosomeY (Build37)
Map Location 2,628,631 - 2,629,487
singlet/doubletsinglet
Overlap geneLOC667244
Upstream geneLOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236, EG631479
Downstream geneLOC100039652
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-234B15.bB6Ng01-234B15.g
ACCGA045958GA045959
length1,207860
definitionB6Ng01-234B15.b B6Ng01-234B15.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcttgtatatacgaagttctacacgtgcatttctcatttccatgtt
tttagttgtaactcctttacataccatgttctacaacaatcttttctcat
atatatgtttttttattgtttatcattcttacacaatgttctacagtgtg
gtttttctcattttccatgtttttctatgtaactcctttaaacatgatat
tctaccatgtgtgtttctcattttttatggttttcaaagtaactcactca
tacacagtgttcaacagtgtggtttttctcattttccactttttccctgt
aactcctttatatccgatgttctccagtgtgtgttgcttatttcttatgg
tttttattgtaactcactcatacacaatgtcctacagtgtggtttttctc
attttccatgttttgcattttaacccatgtatgtacggtgttctacaatg
tgcgtttctcattatatatgtttttcttcgaactcactcatacaaaatgt
tatacggtgagtttttctttcattttccatatttttcattgtaattcttg
tatatacgacgttctacaacgtgcattactcatttccatgttttttgttg
taactcctttccatgccatgttctaccacgttcattctcagatatatgct
ttttattgttactcattcttcgacaatgttctacagtgtggtttttctca
ttttccatgtttttcattgcaacctatgtatatacggtgtgctacacttt
gcgtttctcattttttatggttttcattgtaactcactcatacataatgt
tctacagagtggttttcctcattttccatatttttcattgtaattcttgt
atatacgatgttctacaacgtgcagttctcattttccatgttgttagttg
taactccattacataccatgttctacaattatcttttctcatatatatgt
tttttattgtactcattcttccacaatgttctacagtgtggtttttctca
ttttcatgtttttctatgtaactccttcaacatgatattctacatgtgtg
tttctcatttttatggtttcaaaataacttcactcataacacagtgtcac
aagggtggatttttctcatttccacttttccctgtgttctcaaggtgtgc
tactcgatggtttattgtagctacctcatacaccagggtcatcacaaggg
tgggagt
gaattctcaattttgcattacctttattgatatgcatttgtaagcatgaa
tctcttataggtatcttctttgatgaaaaccaggtatttgtgaaccctgt
tgtagaactggtgaacatgaagaatagggaaaatcagtgtacagagtatg
atattttcatcatttggaattttccacaaggccttggattaaaagtgaaa
atattaagctatttaccttgttttccaaagagtcaacaacttcatatatc
tgatggtttggaatgggccatgggaggaacatcagtgagtataccataat
ttttttcaggttatgtgtattttaaaataagaggccaattgctactcttg
caaaagaccatcctaagttgcaataattaaaatttgataatgctaaactt
catgtaaatctggtcatagatggatcctggcctctggattgcatgttcaa
atgtatccaaaagactatacacctaaaatacaggaatatatttaatgaat
ttaaaatttaatgtatatgtacatatgattaatgaaacttttgtaactat
atataatccatgggatttttttcattctgtgcaaacatatttatagccta
attaagtatatcgtgcattgattaacataaatgtttctccagattcaagg
ttttctctttttaatttatatattttgtattgtttttttgtttatttatt
tacatttcaaatgttatcccccttcgtgatttctcctcctctgtggagga
ttgccttatctggcatcagtgggaggggaatcccttggtcctgtgaaggc
ttgaggccgcagcacaggtgaatgctacagcggtgaggcaggagttgggg
tggggtgggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_2628631_2629487
seq2: B6Ng01-234B15.g_64_923

seq1  GAATTCTCAATTTTGCATTACCTTTATTGATATGCATTTGTAAGCATGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAATTTTGCATTACCTTTATTGATATGCATTTGTAAGCATGAA  50

seq1  TCTCTTATAGGTATCTTCTTTGATGAAAACCAGGTATTTGTGAACCCTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTATAGGTATCTTCTTTGATGAAAACCAGGTATTTGTGAACCCTGT  100

seq1  TGTAGAACTGGTGAACATGAAGAATAGGGAAAATCAGTGTACAGAGTATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGAACTGGTGAACATGAAGAATAGGGAAAATCAGTGTACAGAGTATG  150

seq1  ATATTTTCATCATTTGGAATTTTCCACAAGGCCTTGGATTAAAAGTGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTCATCATTTGGAATTTTCCACAAGGCCTTGGATTAAAAGTGAAA  200

seq1  ATATTAAGCTATTTACCTTGTTTTCCAAAGAGTCAACAACTTCATATATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAAGCTATTTACCTTGTTTTCCAAAGAGTCAACAACTTCATATATC  250

seq1  TGATGGTTTGGAATGGGCCATGGGAGGAACATCAGTGAGTATACCATAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGTTTGGAATGGGCCATGGGAGGAACATCAGTGAGTATACCATAAT  300

seq1  TTTTTTCAGGTTATGTGTATTTTAAAATAAGAGGCCAATTGCTACTCTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCAGGTTATGTGTATTTTAAAATAAGAGGCCAATTGCTACTCTTG  350

seq1  CAAAAGACCATCCTAAGTTGCAATAATTAAAATTTGATAATGCTAAACTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGACCATCCTAAGTTGCAATAATTAAAATTTGATAATGCTAAACTT  400

seq1  CATGTAAATCTGGTCATAGATGGATCCTGGCCTCTGGATTGCATGTTCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTAAATCTGGTCATAGATGGATCCTGGCCTCTGGATTGCATGTTCAA  450

seq1  ATGTATCCAAAAGACTATACACCTAAAATACAGGAATATATTTAATGAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATCCAAAAGACTATACACCTAAAATACAGGAATATATTTAATGAAT  500

seq1  TTAAAATTTAATGTATATGTACATATGATTAATGAAACTTTTGTAACTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATTTAATGTATATGTACATATGATTAATGAAACTTTTGTAACTAT  550

seq1  ATATAATCCATGGGATTTTTTTCATTCTGTGCAAACATATTTATAGCCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAATCCATGGGATTTTTTTCATTCTGTGCAAACATATTTATAGCCTA  600

seq1  ATTAAGTATATCGTGCATTGATTAACATAAATGTTTCTCCAGATTCAAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGTATATCGTGCATTGATTAACATAAATGTTTCTCCAGATTCAAGG  650

seq1  TTTTCTCTTTTTAATTTATATATTTTGTATTGTTTTTTTGTTTATTTATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTCTTTTTAATTTATATATTTTGTATTGTTTTTTTGTTTATTTATT  700

seq1  TACATTTCAAATGTTATCCCCCTTCGTGATTTCTCCTCCTCTGTGGAGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTTCAAATGTTATCCCCCTTCGTGATTTCTCCTCCTCTGTGGAGGA  750

seq1  TTGCCTTATCTGGCATCAGTGGGAGGGGAATCCCTTGGTCCTGTGAAGGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTTATCTGGCATCAGTGGGAGGGGAATCCCTTGGTCCTGTGAAGGC  800

seq1  TTGAGGCCGCAGCACAGGTGAATGCTACAGCGGTGAGGCAGGAGT--GGG  848
      |||||||||||||||||||||||||||||||||||||||||||||  |||
seq2  TTGAGGCCGCAGCACAGGTGAATGCTACAGCGGTGAGGCAGGAGTTGGGG  850

seq1  T-GGGTGGGG  857
      | ||||||||
seq2  TGGGGTGGGG  860