BAC Information

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BAC

Clone NameB6Ng01-237O18
ChromosomeY (Build37)
Map Location 1,389,433 - 1,390,575
singlet/doubletsinglet
Overlap geneZfy2
Upstream geneTspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278, EG667079, LOC667089, Rhoay-ps1
Downstream geneUbe1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-237O18.bB6Ng01-237O18.g
ACCGA048756GA048757
length1,2021,132
definitionB6Ng01-237O18.b B6Ng01-237O18.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccaaaacaccatcagatccatttacaaaaggcgatattcaacaaa
actggataacctgaatgaaatggacaaaattctagacagatacctggtac
caaagataaatcaggatcaggttaatgttctaaacagtcctatatcccct
aaagaaatagaagcagtcattaatagtctcccaaccaaaaaaaaaaaaag
cccaggactaaatgggtttactgcagagctctatcagaccttcaaagaag
atctaattccagttcttcacaaactgttccacaaaatagaagcagaatgt
actctacccaactcattctatgaagccacaattattctgatacctaaacc
tcagaaaaacccaagaaagatagagaacttcagaccaatttcccttatga
atatgaatgcaaaaatcctcaataaaattctcactaaccaaatccaagaa
cacatcaaaacaatcatccatcctgaccaagtacgattcattccagggat
gcagggataaggtttaatatatggaaatccctcaacaaaatccattatat
aaacaaactcaaagataaacaccacatgatcatctcgttacatgctgaga
aagcatttgacaaaatccaacacccattcatgataaaagtcctggaaaga
tcaggaattccaggcccatacctaaacatgataaaagcaatctacagcaa
accagtagccaacaacaaagtaaatggtgagaagctggaagcaagcccac
taaaatcagggactagacaagggcagctcactttctcatttctcctattc
aacattgtacttgaagtcctagccagagcattcgacaacaaaagagatca
aggggatacaaattggaaaggaaagagtcaaaatatctctttttgcagat
gatatgatagtatatatgagtgaccctaaaaattcttccagagaactcct
aaatctgataaacagcttaggtgaagtagctggatataaaatgaatcaga
cagtcaattgccctttctctacacaaagataaacaggctgagaaagaaat
tagggaaacaacaccttctcatagtcacgatataatgatattcttggtct
gacttaactaaggagtgaggatcttgtatggaataaggaattcgctctct
agcaaggaggaataggaatctctcggaaggattaatgaatctctctccaa
tg
gaattcaataccagaggatgagaaaatcaaagtaattggtcactatgtaa
ctaataggatgatagccttagatttataaaacactatcccataaaaccaa
acaacaacaacaaagacctgactctaatatattattgaaggtttttataa
gatgctcattctataaattcccttgataccaaccatggcaacctgagttc
agttcctggcactaacatgacagaaattgagaaccaccttttacaagttg
tcctctaacctgaacattaatactttggtacttatgcttatgtaagacat
atagaaataaaacaatttaagcttaatattgggtacatataaaaaagtta
atgtatttgcataaaaataaagacatctactttatattaaaacaaaatat
taaaaaatgtgtttaatttttgattaggtaaactggctatttctcataca
agtctaaagcaaattaagaaatttacttgaaacattaaagtgactcttat
gttaataggtgttaataggactttcttgtctttctgtttcagacatgaat
ttatatttattatacctggtatcagttcattttttgtccagctaattaaa
gcaaaaccatagtctcttacaaactttttgtgtaattagaaggtcaacta
ggatggatcatttgtgtacacataccttaattatttaggaattttgaatt
ttaccattttataatgtgaaatttataattgaatttataatttagcaaga
taaaataaaaaatattgtaaatttattgttgtagtaacatccttccaaag
tttcctgggaatatacaaagtgggtttaagactgagatgctataagtaga
caagaggaacttccctctgtctagatgtttgtataacttattctgggaaa
atgtaatattagtttctgtgtaaaatttaaagtttacttaggtttgaagt
gaaaaaaaatctcagaacttacttcctgaatgtgaaagaacaaaacccat
aaagaatatttatctcacttttaatatagtgtttctatctatcctctatg
aattgaatagtttatgggaatgagtgcctccagagatgcaaatatggatg
acatttaaatattaatataattagattgttgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1389433_1390575
seq2: B6Ng01-237O18.g_63_1194 (reverse)

seq1  ACAACAAATACTAATTTATATTAAATATTAAAATGTCAT-CATATTTGCA  49
      |||||||   |||| ||||||| |||||| ||||||||| ||||||||||
seq2  ACAACAA--TCTAA-TTATATT-AATATTTAAATGTCATCCATATTTGCA  46

seq1  TCTCT-GAGGCACTCATTTCCCATAACCTATCAATTTCAATAAGAAGGAA  98
      ||||| |||||||||| ||||||||| ||||  | ||||   |||  | |
seq2  TCTCTGGAGGCACTCA-TTCCCATAAACTATTCAATTCA--TAGA--GGA  91

seq1  TAGATAGGAAACACTATAATTAAAAGTGAAGATAAATTATTCTTTAT-GG  147
      |||||| |||||||||| |||||||||| ||||||| |||||||||| ||
seq2  TAGATA-GAAACACTAT-ATTAAAAGTG-AGATAAA-TATTCTTTATGGG  137

seq1  TTTTGTTCTTTCAACATTCCAGGAAGTAAGTTCTGAGATTTTTTTTCACT  197
      |||||||||||| ||||| |||||||||||||||||||||||||||||||
seq2  TTTTGTTCTTTC-ACATT-CAGGAAGTAAGTTCTGAGATTTTTTTTCACT  185

seq1  TCAAAACTAAGTAAACTTTAAATTTTACACAGAAACTAATATTACATTTT  247
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACCTAAGTAAACTTTAAATTTTACACAGAAACTAATATTACATTTT  235

seq1  -CCAGAATAAGTTATACAAACATCTAGACAGAGGGAAGTTCCTCTTGTCT  296
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAATAAGTTATACAAACATCTAGACAGAGGGAAGTTCCTCTTGTCT  285

seq1  ACTTATAGCATCTCAGTCTTAAACCCACTTTGTATATTCCCAGGAAACTT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATAGCATCTCAGTCTTAAACCCACTTTGTATATTCCCAGGAAACTT  335

seq1  TGGAAGGATGTTACTACAACAATAAATTTACAATATTTTTTATTTTATCT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGGATGTTACTACAACAATAAATTTACAATATTTTTTATTTTATCT  385

seq1  TGCTAAATTATAAATTCAATTATAAATTTCACATTATAAAATGGTAAAAT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAAATTATAAATTCAATTATAAATTTCACATTATAAAATGGTAAAAT  435

seq1  TCAAAATTCCTAAATAATTAAGGTATGTGTACACAAATGATCCATCCTAG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAATTCCTAAATAATTAAGGTATGTGTACACAAATGATCCATCCTAG  485

seq1  TTGACCTTCTAATTACACAAAAAGTTTGTAAGAGACTATGGTTTTGCTTT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACCTTCTAATTACACAAAAAGTTTGTAAGAGACTATGGTTTTGCTTT  535

seq1  AATTAGCTGGACAAAAAATGAACTGATACCAGGTATAATAAATATAAATT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGCTGGACAAAAAATGAACTGATACCAGGTATAATAAATATAAATT  585

seq1  CATGTCTGAAACAGAAAGACAAGAAAGTCCTATTAACACCTATTAACATA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCTGAAACAGAAAGACAAGAAAGTCCTATTAACACCTATTAACATA  635

seq1  AGAGTCACTTTAATGTTTCAAGTAAATTTCTTAATTTGCTTTAGACTTGT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCACTTTAATGTTTCAAGTAAATTTCTTAATTTGCTTTAGACTTGT  685

seq1  ATGAGAAATAGCCAGTTTACCTAATCAAAAATTAAACACATTTTTTAATA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGAAATAGCCAGTTTACCTAATCAAAAATTAAACACATTTTTTAATA  735

seq1  TTTTGTTTTAATATAAAGTAGATGTCTTTATTTTTATGCAAATACATTAA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTTAATATAAAGTAGATGTCTTTATTTTTATGCAAATACATTAA  785

seq1  CTTTTTTATATGTACCCAATATTAAGCTTAAATTGTTTTATTTCTATATG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTATATGTACCCAATATTAAGCTTAAATTGTTTTATTTCTATATG  835

seq1  TCTTACATAAGCATAAGTACCAAAGTATTAATGTTCAGGTTAGAGGACAA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACATAAGCATAAGTACCAAAGTATTAATGTTCAGGTTAGAGGACAA  885

seq1  CTTGTAAAAGGTGGTTCTCAATTTCTGTCATGTTAGTGCCAGGAACTGAA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTAAAAGGTGGTTCTCAATTTCTGTCATGTTAGTGCCAGGAACTGAA  935

seq1  CTCAGGTTGCCATGGTTGGTATCAAGGGAATTTATAGAATGAGCATCTTA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGTTGCCATGGTTGGTATCAAGGGAATTTATAGAATGAGCATCTTA  985

seq1  TAAAAACCTTCAATAATATATTAGAGTCAGGTCTTTGTTGTTGTTGTTTG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAACCTTCAATAATATATTAGAGTCAGGTCTTTGTTGTTGTTGTTTG  1035

seq1  GTTTTATGGGATAGTGTTTTATAAATCTAAGGCTATCATCCTATTAGTTA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTATGGGATAGTGTTTTATAAATCTAAGGCTATCATCCTATTAGTTA  1085

seq1  CATAGTGACCAATTACTTTGATTTTCTCATCCTCTGGTATTGAATTC  1143
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTGACCAATTACTTTGATTTTCTCATCCTCTGGTATTGAATTC  1132