BAC Information

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BAC

Clone NameB6Ng01-242H19
ChromosomeY (Build37)
Map Location 1,264,726 - 1,265,839
singlet/doubletsinglet
Overlap genenone
Upstream geneJarid1d, Eif2s3y, Tspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278, EG667079
Downstream geneLOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-242H19.bB6Ng01-242H19.g
ACCGA052116GA052117
length1,1181,158
definitionB6Ng01-242H19.b B6Ng01-242H19.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcagcagaagtaccattgtgggaagcagcaaagtttttgattctct
aagacaacagatacactggctaaatcttccaggtacaaccacttggtagc
attgagtctattcttagcatgcagcttctagaaaaaaagcataaagaatt
aagccatgtttcctctggacttgacatgtcagtatcactaatgagtcaca
ttcatgtcaaacagtttcatcactgttacaagatgcctagcaacataagt
gaaagacaggtccatggtcacatgattatgaaaggacatgaaggagcaca
attgttcaacttattagcatcaagtaagcatcaacacaggaagggactaa
agtcaataaacaccttccaagatgtgttccaaatgatcaagttcctttac
aagtttctcaccccttctgtacacacccatcaattgactaactcattgat
taaagccctcagggtccaatcacttttcagagtggatattgtactaccta
tgaacattgtattgtggatgaaagccttcatcaaagacccatgactgaca
tttcaaacccatttcaccacagcattctttatttgacaaaaagttataga
atccatctatctcttcaaggatatctctctctgggagttccaaatggaca
atgtccaggccaacagcatcagaacccccaggaaccttcataaatatgag
ttcaagtagaagaaaaatgcaatgcaagtttagggtcttgagcctccatc
cgtgcatcttaaaccaataaggtggagccagaagtttaggtcagaagtct
gaacttcacctatactaaaaccaactctgaggatttctagccatctccag
tttctgtctggtacttagtcacaccaagtctgcagtaaaggcatattgtg
taatataagatagtgccagcagttgattgttaaaacccactatgtgttga
cttgtatgtaaaatgagaaatctataatatagacacacacatacatacac
acatactcaacagaaaagaggtagagtgagaagctgagtcttaggaaccc
ctaggagaagagtggaaattcttgtaaggcacagagtcaggtggagaaac
tgttctgttgtcttgtct
gaattctattagctatagaattttgagggttgtttacatatactcttata
tcatctgcatatagtgataccctgacttctttctttccagtttgtagcac
ctcgatttcctctaattgcactagctagaacttcaagtactatattaaat
agataagaagagagtgggcaggcttgtcttgatcttgatttaatgggatt
gcttcaagtttctctccatttaattttttgctggctattggtttgctata
tattgcttttaattatgtgccataaattctggattgctccaagacattta
acatgaagtgatgttgtattttgtcaaatgcttttttagcatctatatga
aatgttcatgtaattattttctttgggtttgtttatatagtgtatttcat
tagtggatttctgtatattgaacccttcctgcatccttgtgatgaagttt
acttgattatggtgattaatgggtctgatgtataactggatttgatttgc
aagcattttattctgtatttttgcattgataatcataagagaaattggtc
tgaggttctaactctttgttgggtctttatgtggatttggtaactgtggc
ttcatagaattaattagttaacgttccttctgtttctgttttgtggaata
gtttgaggagtattggtattagctattctatgaagatctggtagaattct
gcactaagcccatctggcactgagctttgggggagggcatttctaatgac
tgttccttagaccttttagatagtttttacctgctcttgatttaactttg
aaacatgatatttgtctagaaaatcatctaattcatctatatttttctgt
tttgttgagtataggtttttgtagtaagataaaatgatttttttttaaat
tcctcagtttctgttgttatgtttcctttttctgatttttgtggatttaa
atcctgtctctgtgccctttagatagtttgtctaggggtttatctattct
gaatgacttttctcaaggaccacctcttagctttggtgggtcttgtattt
tctctttgtttctagttggattgatatcagccctgagtttagctaatttc
cttagttcaactcctccttggggtgattgtatctttctgtccaaagcgct
tctcacag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1264726_1265839
seq2: B6Ng01-242H19.b_47_1164

seq1  GAATTCAGCAGAAGTACCATTGTGGGAAGCAGCAAAGTTTTTGATTCTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCAGAAGTACCATTGTGGGAAGCAGCAAAGTTTTTGATTCTCT  50

seq1  AAGACAACAGATACACTGGCTAAATCTTCCAGGTACAACCACTTGGTAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAACAGATACACTGGCTAAATCTTCCAGGTACAACCACTTGGTAGC  100

seq1  ATTGAGTCTATTCTTAGCATGCAGCTTCTAGAAAAAAAGCATAAAGAATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAGTCTATTCTTAGCATGCAGCTTCTAGAAAAAAAGCATAAAGAATT  150

seq1  AAGCCATGTTTCCTCTGGACTTGACATGTCAGTATCACTAATGAGTCACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCATGTTTCCTCTGGACTTGACATGTCAGTATCACTAATGAGTCACA  200

seq1  TTCATGTCAAACAGTTTCATCACTGTTACAAGATGCCTAGCAACATAAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGTCAAACAGTTTCATCACTGTTACAAGATGCCTAGCAACATAAGT  250

seq1  GAAAGACAGGTCCATGGTCACATGATTATGAAAGGACATGAAGGAGCACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGACAGGTCCATGGTCACATGATTATGAAAGGACATGAAGGAGCACA  300

seq1  ATTGTTCAACTTATTAGCATCAAGTAAGCATCAACACAGGAAGGGACTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTCAACTTATTAGCATCAAGTAAGCATCAACACAGGAAGGGACTAA  350

seq1  AGTCAATAAACACCTTCCAAGATGTGTTCCAAATGATCAAGTTCCTTTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAATAAACACCTTCCAAGATGTGTTCCAAATGATCAAGTTCCTTTAC  400

seq1  AAGTTTCTCACCCCTTCTGTACACACCCATCAATTGACTAACTCATTGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTCTCACCCCTTCTGTACACACCCATCAATTGACTAACTCATTGAT  450

seq1  TAAAGCCCTCAGGGTCCAATCACTTTTCAGAGTGGATATTGTACTACCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCCCTCAGGGTCCAATCACTTTTCAGAGTGGATATTGTACTACCTA  500

seq1  TGAACATTGTATTGTGGATGAAAGCCTTCATCAAAGACCCATGACTGACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACATTGTATTGTGGATGAAAGCCTTCATCAAAGACCCATGACTGACA  550

seq1  TTTCAAACCCATTTCACCACAGCATTCTTTATTTGACAAAAAGTTATAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAACCCATTTCACCACAGCATTCTTTATTTGACAAAAAGTTATAGA  600

seq1  ATCCATCTATCTCTTCAAGGATATCTCTCTCTGGGAGTTCCAAATGGACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATCTATCTCTTCAAGGATATCTCTCTCTGGGAGTTCCAAATGGACA  650

seq1  ATGTCCAGGCCAACAGCATCAGAACCCCCAGGAACCTTCATAAATATGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCCAGGCCAACAGCATCAGAACCCCCAGGAACCTTCATAAATATGAG  700

seq1  TTCAAGTAGAAGAAAAATGCAATGCAAGTTTAGGGTCTTGAGCCTCCATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGTAGAAGAAAAATGCAATGCAAGTTTAGGGTCTTGAGCCTCCATC  750

seq1  CGTGCATCTTAAACCAATAAGGTGGAGCCAGAAGTTTAGGTCAGAAGTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGCATCTTAAACCAATAAGGTGGAGCCAGAAGTTTAGGTCAGAAGTCT  800

seq1  GAACTTCACCTATACTAAAACCAACTCTGAGGATTTCTAGCCATCTCCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTCACCTATACTAAAACCAACTCTGAGGATTTCTAGCCATCTCCAG  850

seq1  TTTCTGTCTGGTACTTAGTCACACCAAGTCTGCAGT-AAGGCATATTGTG  899
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TTTCTGTCTGGTACTTAGTCACACCAAGTCTGCAGTAAAGGCATATTGTG  900

seq1  TAATATAAGATAGTGCCAGCAGTTGATTGTTAAAACCCACTATGTGTTGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATAAGATAGTGCCAGCAGTTGATTGTTAAAACCCACTATGTGTTGA  950

seq1  CTTGTATGTAAAATGAGAAATCTATAATATAGACACACACATACATACAC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTATGTAAAATGAGAAATCTATAATATAGACACACACATACATACAC  1000

seq1  ACATACTC-ACAG-AAAGAGGTAAGAAGTGGAGAAGCTGAGTCTTAGGAA  1047
      |||||||| |||| |||||||||   ||| ||||||||||||||||||||
seq2  ACATACTCAACAGAAAAGAGGTA--GAGT-GAGAAGCTGAGTCTTAGGAA  1047

seq1  CCCCCAAGGAAGAGAGTGGAAA-TCTTGTAAGGCACAGAGGTCAG--TGA  1094
       |||| ||||  |||||||||| |||||||||||||||| |||||   ||
seq2  -CCCCTAGGAGAAGAGTGGAAATTCTTGTAAGGCACAGA-GTCAGGTGGA  1095

seq1  GAAACTG-TCTG-TGTC-TGTCT  1114
      ||||||| |||| |||| |||||
seq2  GAAACTGTTCTGTTGTCTTGTCT  1118