BAC Information

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BAC

Clone NameB6Ng01-261K10
ChromosomeY (Build37)
Map Location 1,678,890 - 1,679,301
singlet/doubletsinglet
Overlap genenone
Upstream geneUsp9y, LOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401
Downstream geneLOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236, EG631479, LOC667244
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-261K10.bB6Ng01-261K10.g
ACCGA066265GA066266
length1,198408
definitionB6Ng01-261K10.b B6Ng01-261K10.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcagggcacatacctaaacatagtaaaatcaatatacaacaaacca
gtagccaaagtcaaaataaatggaaagaattttgatacaatcccaccaaa
atcagacaagaccagacaagacgtcccactctctccttacctattaacta
tagtactagaagttctagccagagcaactagataacaaaaagagttcaaa
gggataaaaattggaaaggaataagtcaaaataaccctatttgcagaaga
tatggtagtatatttaagtgaccacaaaaattctacgagagaactcctaa
atctgataaacaacttcagtaaagtggctggagtggctggatataaatta
actcaaacaaatgagtagctttcctctactcaaaggataaacaggctgaa
aaagaaattatggaagcaactcccttcacaatagtcaaaaattataatac
cttggtgtgactcaaaccaagcaagtgaaggatctgtatgacaacttcaa
gtctctgaagaaagtaattgaaaatctcagaagatggaaaaatctcccat
gctcatagatcagcacgattaattcagtaaaaatggcaatcttgccaaaa
gcaatctccagattcaatgcaatctcaatcaaaattcaaactcaattctt
catagagatagaaagagcaatttgcaaaattatttggaataacaaaaatc
caggatatcaaaaaattattcacaacaattaaagaagttcagagggaatc
accccccacctcaagctgtattatagagcaatagtggtaaaaatgtatgg
taatggtacagagacaatgacttcaagaaattcacaggcaaatgtatgga
actaaaatatatcatcctgtgtgtggtaacccaattcaaaaagaacaaac
atggtatgcactccctgataaattgatacttgcctaaaagctcagaatac
ccaaaatgtaattcacagaccacatgaagctcaagaagaaggaagaaaaa
gtggtgggtgtttcagtccattcttagatgaggaaaagatgctctgggga
ggaaatatggagacaatgcatagcagagatgagatgatcatcagagtctg
ccactatggatacattcattacgacaaaaccagtcactacttggatccaa
ggctgctgacggacctaattgacgtcctaatgagaagcctctctggac
ttcagtgctcatcaactcaacccaaaatactatacgattatactggcatt
gaacaatgtacttgaataacctgcatagttttaaagaaatttgcacaaat
atttaaaaaccataagaaccaaatgaaaatgcaagcacttatgttttgga
acctaagacataataacaagatgatcattggcagctatgagtgcttttgt
gaaactgaaaaagtgttcatatatatatatatatatatatatatatatat
atgcatatatatgtgtgtatatatgcaaacaaataaataaataaatacat
atttgttatatattatatacattttatatattaaatatattaaataatat
ataataatatatattaaatgtatgttgtaacatgtgtgtgtgtatgtgtg
tgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1678890_1679301
seq2: B6Ng01-261K10.g_65_478 (reverse)

seq1  CACACACACACACATACACACACACATGTTACAACATACATTTAATATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACATACACACACACATGTTACAACATACATTTAATATAT  50

seq1  ATTATTATATATTATTTAATATATTTAATATATAAAATGTATATAATATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTATATATTATTTAATATATTTAATATATAAAATGTATATAATATA  100

seq1  TAACAAATATGTATTTATTTATTTATTTGTTTGCATATATACACACATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAAATATGTATTTATTTATTTATTTGTTTGCATATATACACACATAT  150

seq1  ATATGC--ATATATATATATATATATATATATATATATATGAACACTTTT  198
      ||||||  ||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCATATATATATATATATATATATATATATATATATGAACACTTTT  200

seq1  TCAGTTTCACAAAAGCACTCATAGCTGCCAATGATCATCTTGTTATTATG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTTCACAAAAGCACTCATAGCTGCCAATGATCATCTTGTTATTATG  250

seq1  TCTTAGGTTCCAAAACATAAGTGCTTGCATTTTCATTTGGTTCTTATGGT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGGTTCCAAAACATAAGTGCTTGCATTTTCATTTGGTTCTTATGGT  300

seq1  TTTTAAATATTTGTGCAAATTTCTTTAAAACTATGCAGGTTATTCAAGTA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAATATTTGTGCAAATTTCTTTAAAACTATGCAGGTTATTCAAGTA  350

seq1  CATTGTTCAATGCCAGTATAATCGTATAGTATTTTGGGTTGAGTTGATGA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTTCAATGCCAGTATAATCGTATAGTATTTTGGGTTGAGTTGATGA  400

seq1  GCACTGAAGAATTC  412
      ||||||||||||||
seq2  GCACTGAAGAATTC  414