BAC Information

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BAC

Clone NameB6Ng01-271P16
Chromosome11 (Build37)Y (Build37)
Map Location 59,292,994 - 59,294,0831,479,363 - 1,479,394
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneOlfr332, Olfr331, Olfr330, Olfr329, Olfr328, Olfr327-ps1, Olfr325, Olfr324, 2210407C18Rik, Olfr323, Trim58, Olfr216, OTTMUSG00000005755, Olfr320, LOC668058, Olfr319, Olfr318, Olfr317, Olfr316, Olfr315, Olfr314, 3100002J23Rik, Olfr313, Olfr312, GA_x5J8B7W3UM0-1747565-1747342, Olfr311, 2810021J22Rik, Zfp39, Butr1, Rnf187, LOC676691, Hist3h2ba, Hist3h2bb, Hist3h2a, LOC382523, Trim17, Trim11, Obscn, A230051G13Rik, 4930543L23Rik, Gja12, Guk1, Mrpl55, 2310033P09Rik, Arf1, Wnt3a, Wnt9a, Gm249, 1110031B06Rik, Jmjd4, BC050078, LOC432565
Downstream geneZkscan17, Nlrp3, Olfr222, LOC668157, Olfr223, GA_x5J8B7W3UM0-970645-971221, Olfr225, AA536749, 4933433K01Rik, Flcn, Cops3, Nt5m, Med9, Rasd1, Pemt, Rai1, Srebf1, Tom1l2, LOC667892, Lrrc48, Atpaf2, 4933439F18Rik, LOC674310, Drg2, Myo15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-271P16.bB6Ng01-271P16.g
ACCGA073917GA073918
length1,127587
definitionB6Ng01-271P16.b B6Ng01-271P16.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(59,292,994 - 59,294,083)(1,479,363 - 1,479,394)
sequence
gaattcttcactatttgcacttgactaaagggaataggaatgttctgaag
taaatttttttttttttttcgagacagggtttctctgtatagccctggct
gtcctagaactcactctgtagaccaggctggtctcgaattcagaaatccg
cctgcctctgcctcccaagtgctgggattaaaggtgtgtgccaccactgc
ccggcttttattgttttactgacatttgttgcttgactttttctgagatg
tgaaattaccatcacagggctcagtaaagctcttaatggtgagctaagaa
gaaattgttgaagacttccttctagtacaggaagtaattgagtggggtat
tataagacttctctagagagatggaaagccattaaggccctaacccatag
tgcccactgaatctgaatttgcctgtgaactacattttgaacagtacaga
gaactgaatctcaaactgcctctctcacaccattttctcagtaatggctg
cccttcccctatggttcttatgaggacttcacccacatattgaaaagaga
aagatggccaccctgagacttccctcagtggcattccattctcagatggc
ttggccttgattggctatggtaccagccatcacggacagcatgtaactct
tgtttcagcaaggaggcccattgtctcctacaaaggataggggaaaggta
gccatgtcaggatggtgccctgtgcatcctgcatccatccttcaccatca
cctggaccagcctcacctgcctgcctcagcacccacgggccaccactcct
ccatgacttctttcttgttctgttgatccctatttggggcatttacagtg
ctgtgtgttctttttcctggagagagagagagagagagagagagagagag
agagagagagagagagatccattcttacttcaccctaggcaggggcggtg
gaacaacaagggtcaaaggaaaagggagtccagtgtaatttccatcctgg
gtgaaccttgttgagtcttatgaagggcttaccacatgaaggtaattgga
ttaagcaccgaagtatgtttcaagtagcaatggatgcctggtcagtcagc
tgtcctctcagtgaaacagcatgtcct
gaattcctggatgttttgtgccaggaattgtctagatttaatatattctt
tcactaatgtatcaatttcttctattgtattttctatgtctgagattctc
ttttccagctcttgtattctgttggtgatgcttgcatctgtttttcctgt
tctcttccctaggttttcaatccccaggattactttaggttgtgttttct
ttattacttcagttttatttaattccttcacctgtttaattgcattttcc
tatattttaagggatttattcatttcttctttaaaggcctctatcatttt
tacaagattggatttaaggtcttgtgtgtgtgtgtgtgtttgtgtgtgtg
tgtgcgtatgcttcggttgtgttaggatatccagggcttcctgtagtagg
gtagatgggctctgaaggtctcagatcaccctggctttttgttgattgtg
ttcttttgagagctgttagccatttggatggctttggtccctggatgttc
ctgttgtagcagatattgggagggaggtgaacctccatggtcatggtgtt
gcaggtctctgatggttcaggatccgcacgtttgagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_59292994_59294083
seq2: B6Ng01-271P16.b_51_1177

seq1  GAATTCTTCACTATTTGCACTTGACTAAAGGGAATAGGAATGTTCTGAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCACTATTTGCACTTGACTAAAGGGAATAGGAATGTTCTGAAG  50

seq1  TAAATTTTTTTTTTTTTTTCGAGACAGGGTTTCTCTGTATAGCCCTGGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTTTTTTTTTTTTTTCGAGACAGGGTTTCTCTGTATAGCCCTGGCT  100

seq1  GTCCTAGAACTCACTCTGTAGACCAGGCTGGTCTCGAATTCAGAAATCCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTAGAACTCACTCTGTAGACCAGGCTGGTCTCGAATTCAGAAATCCG  150

seq1  CCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGTGTGTGCCACCACTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGTGTGTGCCACCACTGC  200

seq1  CCGGCTTTTATTGTTTTACTGACATTTGTTGCTTGACTTTTTCTGAGATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGCTTTTATTGTTTTACTGACATTTGTTGCTTGACTTTTTCTGAGATG  250

seq1  TGAAATTACCATCACAGGGCTCAGTAAAGCTCTTAATGGTGAGCTAAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATTACCATCACAGGGCTCAGTAAAGCTCTTAATGGTGAGCTAAGAA  300

seq1  GAAATTGTTGAAGACTTCCTTCTAGTACAGGAAGTAATTGAGTGGGGTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTGTTGAAGACTTCCTTCTAGTACAGGAAGTAATTGAGTGGGGTAT  350

seq1  TATAAGACTTCTCTAGAGAGATGGAAAGCCATTAAGGCCCTAACCCATAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGACTTCTCTAGAGAGATGGAAAGCCATTAAGGCCCTAACCCATAG  400

seq1  TGCCCACTGAATCTGAATTTGCCTGTGAACTACATTTTGAACAGTACAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCACTGAATCTGAATTTGCCTGTGAACTACATTTTGAACAGTACAGA  450

seq1  GAACTGAATCTCAAACTGCCTCTCTCACACCATTTTCTCAGTAATGGCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGAATCTCAAACTGCCTCTCTCACACCATTTTCTCAGTAATGGCTG  500

seq1  CCCTTCCCCTATGGTTCTTATGAGGACTTCACCCACATATTGAAAAGAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCCCCTATGGTTCTTATGAGGACTTCACCCACATATTGAAAAGAGA  550

seq1  AAGATGGCCACCCTGAGACTTCCCTCAGTGGCATTCCATTCTCAGATGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGGCCACCCTGAGACTTCCCTCAGTGGCATTCCATTCTCAGATGGC  600

seq1  TTGGCCTTGATTGGCTATGGTACCAGCCATCACGGACAGCATGTAACTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCCTTGATTGGCTATGGTACCAGCCATCACGGACAGCATGTAACTCT  650

seq1  TGTTTCAGCAAGGAGGCCCATTGTCTCCTACAAAGGATAGGGGAAAGGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCAGCAAGGAGGCCCATTGTCTCCTACAAAGGATAGGGGAAAGGTA  700

seq1  GCCATGTCAGGATGGTGCCCTGTGCATCCTGCATCCATCCTTCACCATCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGTCAGGATGGTGCCCTGTGCATCCTGCATCCATCCTTCACCATCA  750

seq1  CCTGGACCAGCCTCACCTGCCTGCCTCAGCACCCAC-GGCCACCACTCCT  799
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CCTGGACCAGCCTCACCTGCCTGCCTCAGCACCCACGGGCCACCACTCCT  800

seq1  CCATGACTTCTTTCTTGTTCTGTTGATCCCTATTT-GGGCATTTACAGTG  848
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CCATGACTTCTTTCTTGTTCTGTTGATCCCTATTTGGGGCATTTACAGTG  850

seq1  CTGTGTGT--CTTTTCCTGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  896
      ||||||||   |||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTGTTCTTTTTCCTGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  900

seq1  AGAGAGAGAGAGAGAGATCCAT--CTAC-TCACCCCAGGCAGGG--CGTG  941
      ||||||||||||||||||||||   ||| |||||| ||||||||   |||
seq2  AGAGAGAGAGAGAGAGATCCATTCTTACTTCACCCTAGGCAGGGGCGGTG  950

seq1  G-ACAACA--GGTCAAAG---AAAGGAGTCCAGTGTAA-TTCCATC--TG  982
      | ||||||  ||||||||   || |||||||||||||| |||||||   |
seq2  GAACAACAAGGGTCAAAGGAAAAGGGAGTCCAGTGTAATTTCCATCCTGG  1000

seq1  GTGAACCT--GTGAGTC-TATG-AGGGCT--ACACATGAAGGTA--TGGA  1024
      ||||||||   |||||| |||| ||||||   ||||||||||||  ||||
seq2  GTGAACCTTGTTGAGTCTTATGAAGGGCTTACCACATGAAGGTAATTGGA  1050

seq1  -TAAGCA-CGAAGTA-GTTTCAAG-AGC-ATGGATGC--TGTCAGGCAGC  1067
       |||||| ||||||| |||||||| ||| ||||||||   ||||| ||||
seq2  TTAAGCACCGAAGTATGTTTCAAGTAGCAATGGATGCCTGGTCAGTCAGC  1100

seq1  TG---CCTCAGTG-AACAGCATGTCCT  1090
      ||    ||||||| |||||||||||||
seq2  TGTCCTCTCAGTGAAACAGCATGTCCT  1127

seq1: chrY_1479363_1479394
seq2: B6Ng01-271P16.g_392_423

seq1  TGTGTGTGTGTGTGTGTTTGTGTATGTGTGTG  32
      ||||||||||||||||||||||| ||||||||
seq2  TGTGTGTGTGTGTGTGTTTGTGTGTGTGTGTG  32