BAC Information

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BAC

Clone NameB6Ng01-280N22
ChromosomeY (Build37)X (Build37)
Map Location 980,195 - 980,47256,724,249 - 56,725,276
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100039202, Zfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y, Tspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y
Downstream geneLOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-280N22.bB6Ng01-280N22.g
ACCGA080491GA080492
length9491,028
definitionB6Ng01-280N22.b B6Ng01-280N22.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(980,195 - 980,472)(56,724,249 - 56,725,276)
sequence
gaattcagtcttcttacctacagaatgtgaaagagaattagataaaaatc
actcctttcagactcacttgagttttggaatcactgtgaacctccaaggc
acctgcaggcgaggattttcagaatgaataatacaatagcatcctgagat
tcctgggccacatggaacatggccactgtctccacacaaagtcagaccag
gcaattgcaattaacctcgaggactaaagggagacagaggaatagaatgg
cttacttcttttttttttttagatttatttattattattacttttttaat
acgtattttcctcaattacatttccaatgctatccacaccctcccccaca
ccctcccccccacacacaaccctacccacccattcccattttttggccct
ggctttcccctgtactgggtttattataataatattatttattatttatt
ataataataaatcaggctgctatgaccatagtggagcatgtgcccttatt
aaaagttggaacatcttctggatatatgctcaggagtggtatagctggat
cttccaacagaagtatgaccaactttctgaggaactgccaaactgatttc
cagagtggttgtaccagcttgcaatcctaccagcaatggaggagtgtttc
tctttctccatatcctcatcagaatctgctgtcacctgagtttttgatct
tagccattctgattggtgtgaatagaatctcagggttgttttgatttgca
tttcactgatgattaaggatgttgaacattttttttttttaggtgcttct
tagccatttggtattcctcagttgagaattctttgtttagctctgtgccc
cattttttaatagggttatttgggttttctggagtctaacttcttgagtt
cttatatatattggatattaccccctattggatttagatctttccaaag
gaattcagcacatttaacacggatcaagcagtcacaacaaaggaatgaag
ctcaaatggtgaactttcagactttgtgcagtcagtgaatgaggagcttt
tagaagtaagacatcttcacattgttccagaattcatgactcttaattaa
gtacactgagtttaattcagttcgactaactgtagcagatcatgaataat
gtctttattatgtttacaatatagggacacataatatagggcatttcctt
gcacatacatttttgggacatggtcatagtgataaaaaaaattgcagtag
tcaaaatagggactatttcataaagaaaacattagattgtggaatagata
gacagatagatagatcagggaagtacattattccaaaataatatcctggt
aattaaaagttctatctcaggatgcagcagaaaataatgtttgacaatgt
aattagcaacacagtatacaaaaattaaaaaacaaatatctagattacta
gaaaatacattttaaaattgattcacttgtgacctaaagaatactttgat
ttttttcactaagcaaacaccaaataaactattctacatattaaagtaac
agatagtttagttatgtgtaaactgttcaagaggaaagcaggtagaacca
tttttcagctcagtttatgagactactctcactccagcaccaaaatgtat
gaaaataatatgacaaatgagaaatgcatgctaatgtgactggtgcaaca
taagtgtcaaatgccaaacaaaatactagcaaatgaaatctggccacata
atggaggagctagagaaagtatccaaagagctaaagagatctgcaaccct
gaaggtgcaacattatgaactaaccagtaccccggagctcttgactctag
ctgcatatgtatcaaaagatggcctagtcggccgtcactggaaagagagg
ccattggacaggcaaactttatatgccccagtacaggggatgccacggcc
aaaagtgggatgggtgtgggggtagggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_980195_980472
seq2: B6Ng01-280N22.b_640_920 (reverse)

seq1  CAAATAACCCCATTAAAAAATGGGGCTCAGAACTGAACAAAGATTTCTCA  50
      |||||||||| ||||||||||||||| |||| || |||||||| ||||||
seq2  CAAATAACCCTATTAAAAAATGGGGCACAGAGCTAAACAAAGAATTCTCA  50

seq1  CCTGAGGAATACAGAATGGCAGAGAAGCACCT----GAAAAAAATGTTCA  96
       |||||||||||  ||||||  ||||||||||     |||||||||||||
seq2  ACTGAGGAATACCAAATGGCTAAGAAGCACCTAAAAAAAAAAAATGTTCA  100

seq1  ACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCA  146
      ||||||||||||||||| |||||||||||||||||||||||||||||| |
seq2  ACATCCTTAATCATCAGTGAAATGCAAATCAAAACAACCCTGAGATTCTA  150

seq1  CCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGAT  196
        |||||||| |||||||||||||||||||||| ||||||||||||||||
seq2  -TTCACACCAATCAGAATGGCTAAGATCAAAAACTCAGGTGACAGCAGAT  199

seq1  GCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGAT  246
       |||  | |||| ||||||||||| ||||||||||||||| |||| ||||
seq2  TCTGATGAGGATATGGAGAAAGAGAAACACTCCTCCATTGCTGGTAGGAT  249

seq1  TGCAGGCTTGTACAACCACTCTGGAAATCAGT  278
      |||| ||| |||||||||||||||||||||||
seq2  TGCAAGCTGGTACAACCACTCTGGAAATCAGT  281

seq1: chrX_56724249_56725276
seq2: B6Ng01-280N22.g_68_1095

seq1  GAATTCAGCACATTTAACACGGATCAAGCAGTCACAACAAAGGAATGAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCACATTTAACACGGATCAAGCAGTCACAACAAAGGAATGAAG  50

seq1  CTCAAATGGTGAACTTTCAGACTTTGTGCAGTCAGTGAATGAGGAGCTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAATGGTGAACTTTCAGACTTTGTGCAGTCAGTGAATGAGGAGCTTT  100

seq1  TAGAAGTAAGACATCTTCACATTGTTCCAGAATTCATGACTCTTAATTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGTAAGACATCTTCACATTGTTCCAGAATTCATGACTCTTAATTAA  150

seq1  GTACACTGAGTTTAATTCAGTTCGACTAACTGTAGCAGATCATGAATAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACACTGAGTTTAATTCAGTTCGACTAACTGTAGCAGATCATGAATAAT  200

seq1  GTCTTTATTATGTTTACAATATAGGGACACATAATATAGGGCATTTCCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTATTATGTTTACAATATAGGGACACATAATATAGGGCATTTCCTT  250

seq1  GCACATACATTTTTGGGACATGGTCATAGTGATAAAAAAAATTGCAGTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATACATTTTTGGGACATGGTCATAGTGATAAAAAAAATTGCAGTAG  300

seq1  TCAAAATAGGGACTATTTCATAAAGAAAACATTAGATTGTGGAATAGATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAATAGGGACTATTTCATAAAGAAAACATTAGATTGTGGAATAGATA  350

seq1  GACAGATAGATAGATCAGGGAAGTACATTATTCCAAAATAATATCCTGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGATAGATAGATCAGGGAAGTACATTATTCCAAAATAATATCCTGGT  400

seq1  AATTAAAAGTTCTATCTCAGGATGCAGCAGAAAATAATGTTTGACAATGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAAAGTTCTATCTCAGGATGCAGCAGAAAATAATGTTTGACAATGT  450

seq1  AATTAGCAACACAGTATACAAAAATTAAAAAACAAATATCTAGATTACTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGCAACACAGTATACAAAAATTAAAAAACAAATATCTAGATTACTA  500

seq1  GAAAATACATTTTAAAATTGATTCACTTGTGACCTAAAGAATACTTTGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATACATTTTAAAATTGATTCACTTGTGACCTAAAGAATACTTTGAT  550

seq1  TTTTTTCACTAAGCAAACACCAAATAAACTATTCTACATATTAAAGTAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCACTAAGCAAACACCAAATAAACTATTCTACATATTAAAGTAAC  600

seq1  AGATAGTTTAGTTATGTGTAAACTGTTCAAGAGGAAAGCAGGTAGAACCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGTTTAGTTATGTGTAAACTGTTCAAGAGGAAAGCAGGTAGAACCA  650

seq1  TTTTTCAGCTCAGTTTATGAGACTACTCTCACTCCAGCACCAAAATGTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCAGCTCAGTTTATGAGACTACTCTCACTCCAGCACCAAAATGTAT  700

seq1  GAAAATAATATGACAAATGAGAAATGCATGCTAATGTGACTGGTGCAACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATAATATGACAAATGAGAAATGCATGCTAATGTGACTGGTGCAACA  750

seq1  TAAGTGTCAAATGCCAAACAAAATACTAGCAAATGAAATCTGGCCACATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGTCAAATGCCAAACAAAATACTAGCAAATGAAATCTGGCCACATA  800

seq1  ATGGAGGAGCTAGAGAAAGTATCCAAAGAGCTAAAGAGATCTGCAACCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGGAGCTAGAGAAAGTATCCAAAGAGCTAAAGAGATCTGCAACCCT  850

seq1  GAAGGTGCAACATTATGAACTAACCAGTACCCCGGAGCTCTTGACTCTAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGTGCAACATTATGAACTAACCAGTACCCCGGAGCTCTTGACTCTAG  900

seq1  CTGCATATGTATCAAAAGATGGCCTAGTCGGCCGTCACTGGAAAGAGAGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATATGTATCAAAAGATGGCCTAGTCGGCCGTCACTGGAAAGAGAGG  950

seq1  CCCATTGGACAGGCAAACTTTATATGCCCCAGTACAGGGGAATGCCACGG  1000
       ||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  -CCATTGGACAGGCAAACTTTATATGCCCCAGTACAGGGG-ATGCCACGG  998

seq1  CCAAAAAGTGGGAATGGGT----GGGTAGGGG  1028
      || ||||||||| ||||||    |||||||||
seq2  CC-AAAAGTGGG-ATGGGTGTGGGGGTAGGGG  1028