BAC Information

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BAC

Clone NameB6Ng01-298N04
ChromosomeY (Build37)
Map Location 2,392,275 - 2,420,776
singlet/doubletdoublet
Overlap geneLOC100041505, LOC100039581, LOC676356
Upstream geneZfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568
Downstream geneLOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236, EG631479, LOC667244, LOC100039652
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-298N04.bB6Ng01-298N04.g
ACCGA093833GA093834
length9081,146
definitionB6Ng01-298N04.b B6Ng01-298N04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(2,419,890 - 2,420,776)(2,392,275 - 2,393,433)
sequence
gaattccacattgatagggcaggaaggagggagtgggtaagtgggtggaa
gaacaccctcacagaagcagggggagggaagatgggataggggcttccag
aagggaaaccgggaaaggggttaacacttgaaatgaaaataatgataaaa
aataaaaggacgaccactcgtgctctcaccccgctaccccaacagcgatt
ctctctttagtcatctgtctgccaaagaggtgctagtccttgtctcagta
cttgtggactggagaactggcggaatcgagaactggtggactcgctgacc
cgtggcggaccggcggactagcttacctgtggactggctgactggcagaa
tcccggactctaggacaggcgtcctcagctcaaagaggctggactcagag
tagtcgccttgagccttgcatctgagacattccaggtagtttgtacaact
gcatcccagaagctgtgtgttttcagcaccttcataagtgatggctgcca
tctggacgactattgttggtgatggagcttgtggaataagacatgcttgc
tcatagtcctcagcaaggaccagttttccagaagtttatgtacccacagt
gtatgaaaaactacgtggcagatattgaagtggatggaaagcatgtagat
ttggcttttatgggacacagcctggacagggagattatgactgcctgagg
cctctcttcctatgcagacactgatgttatactgaatgtgttttttccat
tgacagcactgatactttttgaaaacctccccagaaaaaatgggactccc
agaaggtcaaagcaatttctgtccaaatgttaccattcatccctagtttc
caacaggaaaggatccttttgattgtagtaacacacaagacaaggagtta
gtccaatt
gaattctgaaatgtggaagaggaggaagaagcagagcaagaagtggtcct
tcatgtgaagggaacttgggtaactgtacatagtaaaagcagtgtgactg
ataattagtaagataatataagtagaaacactacgacttttatttacatt
ctcatgagtagagcagttaccttcaattagaaaaattaaaagcactgtat
gattaatataagtaacagatgccttaattaaaaattgaatttataccaga
gtgtcaattgcaaaagagttcttttaggatattcagtatttgtcctgatg
tagtcaacagaaattttgcaagatttgttttatgtgcattgctattttgc
ctctgtgtgtatgtctgtatgaaggtttcatatcctagagttatattttt
tagctgttagtgaattgaacacaggtcctcgggagaacttcagtacccct
acactgagtagcaagatttatttctaatcttgttttttagttttgctctt
tagaggccagtattgcgtgtgagttgtaattctaacactttgggaagtta
aaactataccaataggaaaaataaaattgacttaaagtgtccagaactca
gaagtacatttcaaataaatagaattgatcagacaatatttattgctgta
tatttatctgaaaactgttcatttcttcttttgatgacagattgtatata
agcctattgaacactaatttatccttcctgaattatctaaaccttgcaag
ttttaagactgtttcagactctggaagagtttaaaagaaacagaacattt
taacgttaacttttacatgttaccttttgatgtgtgatgagaagatgacg
actcattagaatgcttttttaggcaatcttcaagagtatttttactactt
ttgaaaataataaataaattcaaattttattcttaaaatctataattttt
tgttttaaccaaacttaaatatcaggtaagggctgttagataggataggt
gattatttctcagtagattacatttatatgctctcaatgatctaatggta
atctaaggtttttattctcacctgtattgtaatacaaggtttaatcatac
tgcctacctagatgttattggattttagctaaatgattattcatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_2419890_2420776
seq2: B6Ng01-298N04.b_48_955 (reverse)

seq1  AATTTGACTAACTCC-TGTCTTGTGTGTT-CTTCATTCCAAA-GATCC-T  46
      |||| |||||||||| ||||||||||||| || || || ||| ||||| |
seq2  AATTGGACTAACTCCTTGTCTTGTGTGTTACTACAATCAAAAGGATCCTT  50

seq1  TCCTGTTCGCAACTA-GGATG-ATGGTAACATTTGGACAGAAA-TGC-TT  92
      ||||||| | ||||| ||||| ||||||||||||||||||||| ||| ||
seq2  TCCTGTTGGAAACTAGGGATGAATGGTAACATTTGGACAGAAATTGCTTT  100

seq1  GA-CTTCT-GGAGTCC--ATTTTTCT-GGGATGTTTTC-TAAAGTATCAG  136
      || ||||| |||||||   ||||||| |||| ||||||  ||||||||||
seq2  GACCTTCTGGGAGTCCCATTTTTTCTGGGGAGGTTTTCAAAAAGTATCAG  150

seq1  TGCTGTCAATGG-AAAAACACA-TCAGTATAACATCAGTGTCTGCATAGG  184
      |||||||||||| ||||||||| |||||||||||||||||||||||||||
seq2  TGCTGTCAATGGAAAAAACACATTCAGTATAACATCAGTGTCTGCATAGG  200

seq1  -AGAGAGGCCTCAGGCAGTCATAATCTCCCTGTCCA-GCTGTGTCCCAT-  231
       ||||||||||||||||||||||||||||||||||| |||||||||||| 
seq2  AAGAGAGGCCTCAGGCAGTCATAATCTCCCTGTCCAGGCTGTGTCCCATA  250

seq1  AAAGCCAACTCTACCTGCTTTCCATCCACTTCAATATCTGCCACGTAG-T  280
      |||||||| ||||| ||||||||||||||||||||||||||||||||| |
seq2  AAAGCCAAATCTACATGCTTTCCATCCACTTCAATATCTGCCACGTAGTT  300

seq1  TTTCATACACTGTGGGTACATAAACTTCTGG-AAACTGGTCCTTGCTGAG  329
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TTTCATACACTGTGGGTACATAAACTTCTGGAAAACTGGTCCTTGCTGAG  350

seq1  GACTATGAGCAAGCATGTCTTATTCCACAAGCTCCATCACCAACAATAGT  379
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTATGAGCAAGCATGTCTTATTCCACAAGCTCCATCACCAACAATAGT  400

seq1  CGTCCAGATGGCAGCCATCACTTATGAAGGTGCTGAAAACACACAGCTTC  429
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCCAGATGGCAGCCATCACTTATGAAGGTGCTGAAAACACACAGCTTC  450

seq1  TGGGATGCAGTTGTACAAACTACCTGGAATGTCTCAGATGCAAGGCTCAA  479
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATGCAGTTGTACAAACTACCTGGAATGTCTCAGATGCAAGGCTCAA  500

seq1  GGCGACTACTCTGAGTCCAGCCTCTTTGAGCTGAGGACGCCTGTCCTAGA  529
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGACTACTCTGAGTCCAGCCTCTTTGAGCTGAGGACGCCTGTCCTAGA  550

seq1  GTCCGGGATTCTGCCAGTCAGCCAGTCCACAGGTAAGCTAGTCCGCCGGT  579
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCGGGATTCTGCCAGTCAGCCAGTCCACAGGTAAGCTAGTCCGCCGGT  600

seq1  CCGCCACGGGTCAGCGAGTCCACCAGTTCTCGATTCCGCCAGTTCTCCAG  629
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCCACGGGTCAGCGAGTCCACCAGTTCTCGATTCCGCCAGTTCTCCAG  650

seq1  TCCACAAGTACTGAGACAAGGACTAGCACCTCTTTGGCAGACAGATGACT  679
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACAAGTACTGAGACAAGGACTAGCACCTCTTTGGCAGACAGATGACT  700

seq1  AAAGAGAGAATCGCTGTTGGGGTAGCGGGGTGAGAGCACGAGTGGTCGTC  729
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGAGAATCGCTGTTGGGGTAGCGGGGTGAGAGCACGAGTGGTCGTC  750

seq1  CTTTTATTTTTTATCATTATTTTCATTTCAAGTGTTAACCCCTTTCCCGG  779
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTATTTTTTATCATTATTTTCATTTCAAGTGTTAACCCCTTTCCCGG  800

seq1  TTTCCCTTCTGGAAGCCCCTATCCCATCTTCCCTCCCCCTGCTTCTGTGA  829
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCTTCTGGAAGCCCCTATCCCATCTTCCCTCCCCCTGCTTCTGTGA  850

seq1  GGGTGTTCTTCCACCCACTTACCCACTCCCTCCTTCCTGCCCTATCAATG  879
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGTTCTTCCACCCACTTACCCACTCCCTCCTTCCTGCCCTATCAATG  900

seq1  TGGAATTC  887
      ||||||||
seq2  TGGAATTC  908

seq1: chrY_2392275_2393433
seq2: B6Ng01-298N04.g_67_1212

seq1  GAATTCTGAAATGTGGAAGAGGAGGAAGAAGCAGAGCAAGAAGTGGTCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGAAATGTGGAAGAGGAGGAAGAAGCAGAGCAAGAAGTGGTCCT  50

seq1  TCATGTGAAGGGAACTTGGGTAACTGTACATAGTAAAAGCAGTGTGACTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTGAAGGGAACTTGGGTAACTGTACATAGTAAAAGCAGTGTGACTG  100

seq1  ATAATTAGTAAGATAATATAAGTAGAAACACTACGACTTTTATTTACATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTAGTAAGATAATATAAGTAGAAACACTACGACTTTTATTTACATT  150

seq1  CTCATGAGTAGAGCAGTTACCTTCAATTAGAAAAATTAAAAGCACTGTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGAGTAGAGCAGTTACCTTCAATTAGAAAAATTAAAAGCACTGTAT  200

seq1  GATTAATATAAGTAACAGATGCCTTAATTAAAAATTGAATTTATACCAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAATATAAGTAACAGATGCCTTAATTAAAAATTGAATTTATACCAGA  250

seq1  GTGTCAATTGCAAAAGAGTTCTTTTAGGATATTCAGTATTTGTCCTGATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCAATTGCAAAAGAGTTCTTTTAGGATATTCAGTATTTGTCCTGATG  300

seq1  TAGTCAACAGAAATTTTGCAAGATTTGTTTTATGTGCATTGCTATTTTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCAACAGAAATTTTGCAAGATTTGTTTTATGTGCATTGCTATTTTGC  350

seq1  CTCTGTGTGTATGTCTGTATGAAGGTTTCATATCCTAGAGTTATATTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTGTGTATGTCTGTATGAAGGTTTCATATCCTAGAGTTATATTTTT  400

seq1  TAGCTGTTAGTGAATTGAACACAGGTCCTCGGGAGAACTTCAGTACCCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGTTAGTGAATTGAACACAGGTCCTCGGGAGAACTTCAGTACCCCT  450

seq1  ACACTGAGTAGCAAGATTTATTTCTAATCTTGTTTTTTAGTTTTGCTCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGAGTAGCAAGATTTATTTCTAATCTTGTTTTTTAGTTTTGCTCTT  500

seq1  TAGAGGCCAGTATTGCGTGTGAGTTGTAATTCTAACACTTTGGGAAGTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGGCCAGTATTGCGTGTGAGTTGTAATTCTAACACTTTGGGAAGTTA  550

seq1  AAACTATACCAATAGGAAAAATAAAATTGACTTAAAGTGTCCAGAACTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTATACCAATAGGAAAAATAAAATTGACTTAAAGTGTCCAGAACTCA  600

seq1  GAAGTACATTTCAAATAAATAGAATTGATCAGACAATATTTATTGCTGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTACATTTCAAATAAATAGAATTGATCAGACAATATTTATTGCTGTA  650

seq1  TATTTATCTGAAAACTGTTCATTTCTTCTTTTGATGACAGATTGTATATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATCTGAAAACTGTTCATTTCTTCTTTTGATGACAGATTGTATATA  700

seq1  AGCCTATTGAACACTAATTTATCCTTCCTGAATTATCTAAACCTTGCAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTATTGAACACTAATTTATCCTTCCTGAATTATCTAAACCTTGCAAG  750

seq1  TTTTAAGACTGTTTCAGACTCTGGAAGAGTTTAAAAGAAACAGAACATTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAGACTGTTTCAGACTCTGGAAGAGTTTAAAAGAAACAGAACATTT  800

seq1  TAACGTTAACTTTTACATGTTACCTTTTGATGTGTGATGAGAAGATGACG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACGTTAACTTTTACATGTTACCTTTTGATGTGTGATGAGAAGATGACG  850

seq1  ACTCATTAGAATGC-TTTTTAGGCAATCTTCAAGAGTA-TTTTACTACTT  898
      |||||||||||||| ||||||||||||||||||||||| |||||||||||
seq2  ACTCATTAGAATGCTTTTTTAGGCAATCTTCAAGAGTATTTTTACTACTT  900

seq1  TTGAAAATAAATAAATAAATTCAAATTTTATTCTTAAAAATCTATAATTT  948
      |||||||| |||||||||||||||||||||||||| ||||||||||||||
seq2  TTGAAAAT-AATAAATAAATTCAAATTTTATTCTT-AAAATCTATAATTT  948

seq1  TTTGTTTTAACCAAACTTAAATATCCAAGTAAGGGCTGTTAGATAAGATA  998
      |||||||||||||||||||||||| || ||||||||||||||||| ||||
seq2  TTTGTTTTAACCAAACTTAAATAT-CAGGTAAGGGCTGTTAGATAGGATA  997

seq1  GGTGA-TATTTCTCAAGTAGATTTACATTTTATAATGCTCTCCAAATGAT  1047
      ||||| |||||||| |||||| ||||| ||||| ||||||||  ||||||
seq2  GGTGATTATTTCTC-AGTAGA-TTACA-TTTAT-ATGCTCTC--AATGAT  1041

seq1  CTTAATGGTTAAATCTAA-GTTTTTATTCTCACCTGTATGTAAATACAAA  1096
      | |||||||  ||||||| ||||||||||||||||||||   ||||||| 
seq2  C-TAATGGT--AATCTAAGGTTTTTATTCTCACCTGTATTGTAATACAAG  1088

seq1  GTTTATTCATAATTGCGTA-CTAGATGTATATTGATTTTTTAAGCTAAAA  1145
      ||||| |||| | ||| || |||||||| |||||  ||||  |||| |||
seq2  GTTTAATCAT-ACTGCCTACCTAGATGT-TATTGGATTTT--AGCT-AAA  1133

seq1  TGATTATATCATAT  1159
      ||||||| ||||||
seq2  TGATTAT-TCATAT  1146