BAC Information

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BAC

Clone NameB6Ng01-341B06
ChromosomeY (Build37)
Map Location 6,381 - 6,539
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC100039202, Zfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y, Tspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-341B06.bB6Ng01-341B06.g
ACCGA124572GA124573
length1,0281,158
definitionB6Ng01-341B06.b B6Ng01-341B06.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctttgtttaactctgtaccccatttttaatggggctatttgaatt
tctggagtccagcttcttgaactctttgtatatattggatattagtctcc
tatcagtttaggattggtaaaaatactttctcaatctatttgtgttcttt
ttgtcttattgacagtatcttttgccttacagaagctttgcaatttattg
tggtcccatttgttgattcttgccctgtgcccatatcttcgagcctcccc
ccacctttctccactataaatttcagtgtctcttgttttatgtggagttc
tttgatccacaatatgaactaaccaacaccgccagagctcgtgtttctag
ctgcatatgtagcagaagatggactattgggccatcattgggaagaaagg
ccccttggtcttggaaactttatatgccccagtacaggggaatgccaggg
ccaagaaattttgagtggtaggggagcagagcagggataggatacagggg
aattttggaataacatttgaaatgtaaatgaagaaaataatctaataaaa
aattgaagaaaaaaaaaaaagaagagaaatgttcaaaatgcttagtcatc
agggaaatgtaaatcaaaacaaccctgagattccacctcacgccaggtaa
aatggctaagatcaaaaattcaggtgacagcagatgctggtgaagaggtg
gagaaaaaacactctttcattgctggtgggattgcaagctagtacaacca
ctccggaaatcagtctggcagtttctcagaaaatcggatacattgtactt
ccagatgatacattaatacctctcctgggcatgtacccagaagaagttcc
atctgatattaaggacacatgctccactatgttcatagcagccttattta
taatagccagaacctggaaagaacccagatgtcccgcacagaggaattga
tacagaaaatgtggtgcatttatacaatgaaatactactcagcttattaa
aacaaagatttatgaaatttctaggaaa
gaattctcacctgaggaataccgaatggcagagaaacacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacacttctccattgttggta
ggagtgcaggcttgtacaaccactctggaaatcagtctggctgttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacctagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
gaaactcacacaatatgtactcactgataagtggatattagtcccaaacc
taggatacccaagatataagatataatttgctaaacacatgaaactcaag
aagaatgaagactgaagtgtggacactatgcccctccttagatttgggaa
caaaacacccatggaaggagttacagagacaaagtttggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcatccaaacgctgacacctttgcatacactagcaagattttattgaaa
ggacccagatgtagctgtctcttatgagactatgcccggggcctagcaaa
cacagaagtggatgctcacagtcagctaatggatggatcatagggctccc
aatggagagctagagaaagtagccaaggagctaaagggatctgcaaccct
atagtgaacacattatgaactaccagtaccccgagctcttgactctagct
gcataatatatcaaagatgcctagtcgcatcactgcaagagagccatgac
tgcaaacttatatgcccagtacagggaacccccaggcaaaagggggaatg
ttttgaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_6381_6539
seq2: B6Ng01-341B06.b_464_617

seq1  TTATATGCCCCAGTACAGTGGAATGCCAGAGCTAGGAAACAGAAGTGGGT  50
      |||||||||||||||||| |||||||||| || | ||||      || ||
seq2  TTATATGCCCCAGTACAGGGGAATGCCAGGGCCAAGAAA---TTTTGAGT  47

seq1  GGGTTGGGGAGCACAGCAGGGGGGAAGGTATATGGGACTTTGGGGATAGC  100
       ||| |||||||| |||| |||  | | || | |||| ||| || ||| |
seq2  -GGTAGGGGAGCAGAGCA-GGGATAGGATACAGGGGAATTTTGGAATAAC  95

seq1  ATTTGAAATGTAAATGAAGAAAAT-ATCTAATAAAATTGTTTTTGAAAAA  149
      |||||||||||||||||||||||| |||||||||||   ||   ||||||
seq2  ATTTGAAATGTAAATGAAGAAAATAATCTAATAAAA-AATTGAAGAAAAA  144

seq1  AAAAAAAGAA  159
      ||||||||||
seq2  AAAAAAAGAA  154