BAC Information

Click to search

BAC

Clone NameMSMg01-052J24
ChromosomeY (Build37)
Map Location 2,791,342 - 2,791,539
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236, EG631479, LOC667244, LOC100039652
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-052J24.T7 (MSMg01no052_j24.b1)MSMg01-052J24.TJ (MSMg01no052_j24.g1)
ACCAG281063AG281064
length664699
length of high quality
(start - end)
54 (181 - 234)294 (67 - 360)
definitionCHROMAT_FILE: MSMg01no052_j24.b1 PHD_FILE: MSMg01no052_j24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:53:18 2005CHROMAT_FILE: MSMg01no052_j24.g1 PHD_FILE: MSMg01no052_j24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:53:18 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
AAATTTGGCGCCCTAAACAACCACATATTTTCCCATCCGCGNAATTCACT
CTCNCCTTGCCAACAAAGCTTGTTTACTACTTAANACACCAAANNCCCNC
ACCATCTTATAATGCCCATTGCTCCAGGCACACATGNCTCTTCTCAACAT
TACTGGCNNCATGCAANCAATTGCTCCCANCATGTACCGGCTCTCCACAA
TTCACCACAATATCTGCANNCCCTTCTCTCAATACCCTGCTGGAACCTGG
AAAGCTCTGGCCATCCCACTCTGATACCACTACTGCTGCACCAACTTGAA
CTTCTCTTAAANCATTCACACCTTTTCTATAAAAACAACTCCTCTCTAAA
CCATCTTCTTGCACNACACACACCCCCCAACCCAAACCCCCCCAACACCC
CCCCAAACCCACCCACAACCCCCACCAAAAAAAAAAAAACAACCCCCCCC
AAAAAACCCCCAACCTTATCCCCCACCCCCCCNCCCCCAAAACCCCCTTC
CACACAACAAAAAANNAAATACCACCCATTTCCCCTTCCACTCCCCCCCA
CCCCCCCCCCCCCCCCTATCCCCCTTAATCTTTTATCCCTCTCCCCCCCC
CCCTCACAATCTTTTTTGTGGGGGGGGGACTTCGAAGCTGTCTCNTTCCT
CCAGTCCCCCTTTT
ACTGTGCGTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXTTTTTCCAAATTCTTTGTTCAGTTCTGAGCCCCATTTTTTAATGGG
GTTATTTGATTTTCTGAACCCCACCTTCTTGAGTTCTTTATATATGTTGG
ATATTAGTCCCCCTTTATTGAATTTCTGTACACCCACATACAACTTCTGA
AACATATTTTTATACTGCTCATATAATTTGTTGTTGATCATGTCCCTGTA
AAGTAAAGTAATGAAAGCAGTCAAATTTATACAAATAGGAAAAGAACGCT
CAAAAAAATTAAATTGTTCTTTTCATACAATAAAAAGAAAAATAGCAGTA
AAAAATCATCAAATGCGAAGCAATTACCGATTTTTTTCCTAAGAGATTAT
CAGAGAAGTTTTATTTCATGTTTTAGATTTTCAAAATTAAAGTTTACAGA
CAGATAAATCGATAGATAGATCGATAGATAGATAGATAGATAGATGATAG
ATAGATAGATAGATAGATAGATAGATAGATAGATACATAGATAATCTTTT
CTAGAAAATTAATTGTATTTCAAAGTACGGTTTTATTCTGTTCTACCCAA
TAGAACGTCTAATTTTTTTTCCTATAATGTCTCAGTTAACACTTACTGCA
AAACTATTCAATTATAATATACAAATTGGCTGTATATGTAACTGATTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no052_j24.g1 MSMg01no052_j24.g1 CHROMAT_FILE:
MSMg01no052_j24.g1 PHD_FILE: MSMg01no052_j24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:53:18 2005
         (294 letters)



>mm_chrY_2791046_2791739
          Length = 694

 Score =  329 bits (170), Expect = 1e-94
 Identities = 191/198 (96%)
 Strand = Plus / Plus

                                                                       
Query: 97  ctttattgaatttctgtacacccacatacaacttctgaaacatatttttatactgctcat 156
           |||||||||||||||||| ||||||||||||||||| |||||||||||||||||| ||||
Sbjct: 297 ctttattgaatttctgtatacccacatacaacttctaaaacatatttttatactggtcat 356

                                                                       
Query: 157 ataatttgttgttgatcatgtccctgtaaagtaaagtaatgaaagcagtcaaatttatac 216
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 357 ataatttgttgttgatcatgtccctgtaaagcaaagtaatgaaagcagtcaaatttatac 416

                                                                       
Query: 217 aaataggaaaagaacgctcaaaaaaattaaattgttcttttcatacaataaaaagaaaaa 276
           |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| 
Sbjct: 417 aaataggaaaagaacgctcaaaaaaattaaattgttcttttcgtactataaaaagaaaac 476

                             
Query: 277 tagcagtaaaaaatcatc 294
           ||||||||||||||||||
Sbjct: 477 tagcagtaaaaaatcatc 494


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 694
Length adjustment: 9
Effective length of query: 285
Effective length of database: 685
Effective search space:   195225
Effective search space used:   195225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)