Query= MSMg01no058_b03.b1 MSMg01no058_b03.b1 CHROMAT_FILE:
MSMg01no058_b03.b1 PHD_FILE: MSMg01no058_b03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:00:14 2005
(321 letters)
>mm_chrY_2477650_2478370
Length = 721
Score = 197 bits (102), Expect = 6e-55
Identities = 156/174 (89%), Gaps = 2/174 (1%)
Strand = Plus / Minus
Query: 147 aagaggtatctaaaactacttctcattatctcactttctttaaattgagatttctgatgt 206
||||| ||| |||||||| ||||||||||||| || ||| |||||||| |||||| | ||
Sbjct: 519 aagagttatataaaactatttctcattatctccctctctgtaaattgacatttctaaagt 460
Query: 207 tgaagaggaatgaagtgagtgtgcagattttgtccacataattcctaaaagaaagagcaa 266
|||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct: 459 tgaagaggaatgaagtgagtgtgcagattttgtccacatacttcctaaaagaaggagcaa 400
Query: 267 tagtcatgttccacaaacacctgtattc-gacaccccaattaaattgcatgggt 319
|||||||||||||||||||| ||||| | |||| ||||| |||||||| ||||
Sbjct: 399 tagtcatgttccacaaacacatgtat-cagacataccaatgaaattgcaggggt 347
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 3
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space: 222144
Effective search space used: 222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no058_b03.g1 MSMg01no058_b03.g1 CHROMAT_FILE:
MSMg01no058_b03.g1 PHD_FILE: MSMg01no058_b03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:00:14 2005
(489 letters)
>mm_chrY_1655631_1656520
Length = 890
Score = 389 bits (201), Expect = e-112
Identities = 422/499 (84%), Gaps = 23/499 (4%)
Strand = Plus / Plus
Query: 1 aaaacaaacaaaatctcttcaatctgtctcaccaatcatacattaggtccaatg-cttgg 59
|||||||||||||| ||||||| ||||||| |||| || |||||||||||||| | |
Sbjct: 201 aaaacaaacaaaatgtcttcaaagtgtctcagcaattatgcattaggtccaatgtc-tca 259
Query: 60 gtgctttctgtttcaggctcacaatgatcaatggtatatacttt-ctaggttgtataact 118
||||| || | ||||||||||| ||| |||||| |||| ||| ||| ||||||||||
Sbjct: 260 gtgctctcagcttcaggctcac---gattaatggtttata-tttgctaccttgtataact 315
Query: 119 gcacttca-tttctcta-caggaacctttcctcagattctgtcctcatcaagaatcccat 176
||||| || ||| |||| | |||| ||| |||||||| ||||||||| |||| || |||
Sbjct: 316 gcactacagttt-tctacctggaaacttgcctcagatcctgtcctcagcaaggat--cat 372
Query: 177 -ctaataccatcagacacttctatgc-atcagagggaacaaggtctagctgtgtgccttg 234
| || ||||||||| | |||||||| | |||||||||||| ||||||||||||||| ||
Sbjct: 373 gc-aacaccatcagaaaattctatgcta-cagagggaacaaagtctagctgtgtgccatg 430
Query: 235 caggttgggtagagcattgtcaatatcccttctcctccagcaaaccctctcaag-gctca 293
||| |||| ||||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct: 431 cagtttggttagagcactgtcaatatcccttctcctccagcaaaccctctcaaatgctca 490
Query: 294 caacggttgtctttca-gat---tctgattgcctaagaggaggagcaaatcatctctgct 349
||| | ||||||| || || ||||| ||||||| || ||||||||| |||||| ||
Sbjct: 491 caaagtttgtcttccaagacaaatctgagtgcctaaaagaaggagcaaagcatctccact 550
Query: 350 tgctctaatgtctaaatgacattgcagattaagaaaaaacctag-agcttccctaagatt 408
||||| ||| |||||||| |||||||||||||||||| ||||| || ||||| ||||||
Sbjct: 551 tgctccaatatctaaatgccattgcagattaagaaaatccctagcag-ttccccaagatt 609
Query: 409 ctcattccgggagcatttggacaatccattactttcatagggtccaaaattgtttgaatt 468
|||| ||| ||||||||||| ||||| ||||||||||||||||||||| |||||||||||
Sbjct: 610 ctcagtccaggagcatttgggcaatctattactttcatagggtccaaacttgtttgaatt 669
Query: 469 ctacagaccaatgaattgt 487
|| |||||||||| |||||
Sbjct: 670 ctgcagaccaatgcattgt 688
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 890
Length adjustment: 10
Effective length of query: 479
Effective length of database: 880
Effective search space: 421520
Effective search space used: 421520
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
