BAC Information

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BAC

Clone NameMSMg01-058G19
ChromosomeY (Build37)
Map Location 1,316,506 - 1,316,849
singlet/doubletsinglet
Overlap genenone
Upstream geneEif2s3y, Tspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278, EG667079
Downstream geneLOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-058G19.T7 (MSMg01no058_g19.b1)MSMg01-058G19.TJ (MSMg01no058_g19.g1)
ACCAG285343AG285344
length718730
length of high quality
(start - end)
354 (61 - 414)55 (156 - 210)
definitionCHROMAT_FILE: MSMg01no058_g19.b1 PHD_FILE: MSMg01no058_g19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:00:40 2005CHROMAT_FILE: MSMg01no058_g19.g1 PHD_FILE: MSMg01no058_g19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:00:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCGGCGCTAAACGACTCCTATATTCATAGATGGGCGGAATTCTATCCAAT
TTCACAAATCAGCTTTAATGCCAGCTCCATGGGATCTGACAACTCATGTC
TCTGTGGTCACCTATACTCTCAAGCTACTACCCACCCATATAAATAAAGA
TAATAAATCTTAAAATGAGAGACAAGTTTCATTTGGTTTCATTATTCAAA
TGAAACCTGATTTTGTCTGATTTCTGAGTCTCTTTGGATCAGTTTTCTGG
GTTGCACTTTGTGTAACAAGGCCACATTCCTTTTATCTATCACTCTTTCC
CCCAACTTGTTGTTTCTCCCTCAGACTTCATTCCAGAGATTCTATCTATG
TCCTGTCTTTCTCCCCTTCTTCCTAAAAATCCATCTTTTGCTGCCATCCC
TGCTCCTCTAAGTCATATCTCCAATTCCTTGCTCACTATGCAGACCACAT
AATCTAAGTCCTGTCCATTTTAGCCTGTGTAATATTAGATGTATGCACTG
TTCCAGCCTGCGATGCAACTTTCATCTTGCTTTGATGTTCTTTTCACCAT
AGTCCATTTCTTCCAACAATGTGTTCTCTAACAGCCATGTTATGTTTCCC
CTATTATTTTTTAAGAACTATATACCTTTTATTTGACCAAGATACCGACC
GTTGTTCAATATCCCTACGCCCCCCTCTACTTGTTTACTACCTTCCTCTT
CCATCTTTATAAGCTTAC
NACGATGATGTGGTAGGCCTGGTGGACGCCATGTTTCAAAAAAGAGGGNG
AANTATAGAAGGATTCCCCCAATCTTTATGTTAAAAATGTGATAGGATCT
ATCTGTCTCTTTAAGGGTATCTCTGTCTAGCAGTTACAAAAGCAGAACGT
CCATGCCAACAGAATCATCACCACCATGAGCTTTTTTTTTTTTTTTTTTT
TTAATATGAGTTCAAGAAGAAGGAAAATGCAATGCAAGTTAAGGGTCTTG
ATCCCCTATCCATCCATCTTAAAGCCATAGGGTGGACCCAGAAGTTTAGG
TCAAAAGCGTAAATTTCACCTATTCTTCTTACAACCGTGATGATTTCTAG
CCACCTCCAGTTTCAGCGTGGTATTTAGTCCCACCATCTTACCTCTAGGC
ATATTGCCTAATGTGAAATAATGCCTGTTGTCTATTGCAAAAACCCCTAA
TTGTTGACTTGGATGTCAAATGAGACCTCTATAATATAGATACACTTGTA
CACGTACACTTACTCACCTAAAGAGGCTAGATTTATAGCAGCTGATCCTT
AGGATCCCTCACTGAATACGATAGTGGAAATCTTGCCCGACACAGATGCC
ACCTGAGAANACGTTTGTCTCCTATCCGACAAAACCAGGCACGTCTGCCT
TCCTTCAATGTACTTGTAGTTCTTCACTATCCTTATCCCCCTTTTAAATA
CCTATGCATGTTTTCTGAAATATGGACCGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no058_g19.b1 MSMg01no058_g19.b1 CHROMAT_FILE:
MSMg01no058_g19.b1 PHD_FILE: MSMg01no058_g19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:00:40 2005
         (354 letters)



>mm_chrY_1316312_1317055
          Length = 744

 Score =  346 bits (179), Expect = 1e-99
 Identities = 306/355 (86%), Gaps = 20/355 (5%)
 Strand = Plus / Plus

                                                                       
Query: 3   ctttaatgccagctccatgggatctgacaactcatgtctctgtggtcacctatactctca 62
           ||||||||||||||||| |||| |||||||||||| ||||||||||||||| ||||| ||
Sbjct: 195 ctttaatgccagctccaggggacctgacaactcatttctctgtggtcacctgtactcaca 254

                                                                       
Query: 63  ag--------ctactacccacccatataaa-taaagataataaatcttaaaatgagagac 113
           ||        |||| |||||| |||| ||| |||| |||||||||||||||| |||||||
Sbjct: 255 agcacatgccctac-acccactcata-aaagtaaaaataataaatcttaaaaagagagac 312

                                                                       
Query: 114 aagtttcatttggtttcattattcaaatgaaacctgattttgtctgatttctgagtctct 173
           |||||||||| || ||||||||| ||||||||||||||||| |||||||||||||||| |
Sbjct: 313 aagtttcattaggcttcattatttaaatgaaacctgattttctctgatttctgagtctgt 372

                                                                       
Query: 174 ttggatcagttttctgggttgcactttgtgtaacaaggccacattccttttatctatcac 233
           ||||||||||||| ||||||  || ||||||  ||||| ||||||||||||||||  |||
Sbjct: 373 ttggatcagttttttgggtttaaccttgtgttccaaggtcacattccttttatctgccac 432

                                                                       
Query: 234 tctttcccccaacttgttgtttctccctcagacttcattccagagattctatctatgtcc 293
           || || |||||| || |||||||| ||||||||||||  |||||||||||| ||||||  
Sbjct: 433 tcgtt-ccccaa-tt-ttgtttct-cctcagacttcacaccagagattctacctatgt-- 486

                                                                  
Query: 294 tgtctttctccccttcttcctaaaaatccatcttttgctgccatccctgctcctc 348
             | ||| |||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct: 487 --t-tttttcccctacttcctaaacatccatcttttgctgccatccctgctcctc 538


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 354
Length of database: 744
Length adjustment: 9
Effective length of query: 345
Effective length of database: 735
Effective search space:   253575
Effective search space used:   253575
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)