Query= MSMg01no061_o12.b1 MSMg01no061_o12.b1 CHROMAT_FILE:
MSMg01no061_o12.b1 PHD_FILE: MSMg01no061_o12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:05:00 2005
(395 letters)
>mm_chrY_2477622_2478416
Length = 795
Score = 248 bits (128), Expect = 6e-70
Identities = 311/376 (82%), Gaps = 20/376 (5%)
Strand = Plus / Minus
Query: 4 ggaattctaaat--aaaactttatattcattatggagaatgtattatgagcttgtcaagg 61
|||||||||| | ||| |||| |||||||| || |||| ||||||||| ||| |||||
Sbjct: 684 ggaattctaatttccaaagtttacattcattaaggggaatatattatgagattgccaagg 625
Query: 62 gcattttaatatgaa-tttctttcctgttatgtttatttttcc-ttggtga-tatgaagt 118
||||| || |||| |||||||| |||||| ||| |||||| || ||| | ||||||
Sbjct: 624 acatttggatgtgaattttctttcttgttatactta-ttttccttttctgact-tgaagt 567
Query: 119 -cgaagctactcaaatgaaaaaaaaaaaagaggtatctaaaactacttctcattatctca 177
| ||||||| || | | | || ||||| ||| |||||||| |||||||||||||
Sbjct: 566 gc-aagctac-caca-g-----acaacaagagttatataaaactatttctcattatctcc 515
Query: 178 ctttctttaaattgagatttctgatgttgaagaggaatgaagtgagtgtgcagattttgt 237
|| ||| |||||||| |||||| | |||||||||||||||||||||||||||||||||||
Sbjct: 514 ctctctgtaaattgacatttctaaagttgaagaggaatgaagtgagtgtgcagattttgt 455
Query: 238 ccacataattcctaaaagaaagagcaatagtcatgttccacaaacacctgtattc-gaca 296
||||||| |||||||||||| |||||||||||||||||||||||||| ||||| | ||||
Sbjct: 454 ccacatacttcctaaaagaaggagcaatagtcatgttccacaaacacatgtat-cagaca 396
Query: 297 ccccaattaaattgcatgggtactggctgaatctaaagtccctgtaaatga--atgtgtt 354
||||| |||||||| |||| |||||| ||| ||| |||||||||||| || ||||
Sbjct: 395 taccaatgaaattgcaggggtcctggctaaatagaaaacccctgtaaatgaggatttgtt 336
Query: 355 tgtgtgtgtgtgtgtg 370
||||||||||| ||||
Sbjct: 335 tgtgtgtgtgtctgtg 320
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 2
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 395
Length of database: 795
Length adjustment: 9
Effective length of query: 386
Effective length of database: 786
Effective search space: 303396
Effective search space used: 303396
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no061_o12.g1 MSMg01no061_o12.g1 CHROMAT_FILE:
MSMg01no061_o12.g1 PHD_FILE: MSMg01no061_o12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:05:01 2005
(605 letters)
>mm_chrY_1655631_1656636
Length = 1006
Score = 501 bits (259), Expect = e-146
Identities = 522/617 (84%), Gaps = 30/617 (4%)
Strand = Plus / Plus
Query: 1 aaaacaaacaaaatctcttcaatctgtctcaccaatcatacattaggtccaatg-cttgg 59
|||||||||||||| ||||||| ||||||| |||| || |||||||||||||| | |
Sbjct: 201 aaaacaaacaaaatgtcttcaaagtgtctcagcaattatgcattaggtccaatgtc-tca 259
Query: 60 gtgctttctgtttcaggctcacaatgatcaatggtatatacttt-ctaggttgtataact 118
||||| || | ||||||||||| ||| |||||| |||| ||| ||| ||||||||||
Sbjct: 260 gtgctctcagcttcaggctcac---gattaatggtttata-tttgctaccttgtataact 315
Query: 119 gcacttca-tttctcta-caggaacctttcctcagattctgtcctcatcaagaatcccat 176
||||| || ||| |||| | |||| ||| |||||||| ||||||||| |||| || |||
Sbjct: 316 gcactacagttt-tctacctggaaacttgcctcagatcctgtcctcagcaaggat--cat 372
Query: 177 -ctaataccatcagacacttctatgc-atcagagggaacaaggtctagctgtgtgccttg 234
| || ||||||||| | |||||||| | |||||||||||| ||||||||||||||| ||
Sbjct: 373 gc-aacaccatcagaaaattctatgcta-cagagggaacaaagtctagctgtgtgccatg 430
Query: 235 caggttgggtagagcactgtcaatatcccttctcctccagcaaaccctctcaag-gctca 293
||| |||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 431 cagtttggttagagcactgtcaatatcccttctcctccagcaaaccctctcaaatgctca 490
Query: 294 caacggttgtctttca-gat---tctgattgcctaagaggaggagcaaatcatctctgct 349
||| | ||||||| || || ||||| ||||||| || ||||||||| |||||| ||
Sbjct: 491 caaagtttgtcttccaagacaaatctgagtgcctaaaagaaggagcaaagcatctccact 550
Query: 350 tgctctaatgtctaaatgacattgcagattaagaaaaaacctag-agcttccctaagatt 408
||||| ||| |||||||| |||||||||||||||||| ||||| || ||||| ||||||
Sbjct: 551 tgctccaatatctaaatgccattgcagattaagaaaatccctagcag-ttccccaagatt 609
Query: 409 ctcagtccgggagcatttggacaatccattactttcatagggtccaaaattgtttgaatt 468
|||||||| ||||||||||| ||||| ||||||||||||||||||||| |||||||||||
Sbjct: 610 ctcagtccaggagcatttgggcaatctattactttcatagggtccaaacttgtttgaatt 669
Query: 469 ctacagaccaatgaattgtcccattagaagccaactttccagcaggtagcagcagctcca 528
|| |||||||||| ||||| |||||||||||||||| ||||||||||||||| ||||||
Sbjct: 670 ctgcagaccaatgcattgttccattagaagccaactcaccagcaggtagcagctgctcca 729
Query: 529 actgttgtctccaaaggcagttaaacaaaagcaacctgaagaggcaggtgaactgctcct 588
|||| ||||||||| |||| |||||||||||| ||||||||||| || | |
Sbjct: 730 actgctgtctccaatggcacctaaacaaaagca-------gaggcaggtgatcttataat 782
Query: 589 ggtcccaccaaggtgac 605
|||||||||||||||||
Sbjct: 783 ggtcccaccaaggtgac 799
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 605
Length of database: 1006
Length adjustment: 10
Effective length of query: 595
Effective length of database: 996
Effective search space: 592620
Effective search space used: 592620
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
