BAC Information

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BAC

Clone NameMSMg01-065E19
ChromosomeY (Build37)
Map Location 2,795,076 - 2,795,487
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236, EG631479, LOC667244, LOC100039652
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-065E19.T7 (MSMg01no065_e19.b1)MSMg01-065E19.TJ (MSMg01no065_e19.g1)
ACCAG290543AG290544
length683676
length of high quality
(start - end)		606 (45 - 650)592 (72 - 663)
definitionCHROMAT_FILE: MSMg01no065_e19.b1 PHD_FILE: MSMg01no065_e19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:10:46 2005CHROMAT_FILE: MSMg01no065_e19.g1 PHD_FILE: MSMg01no065_e19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:10:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCAGGTTAACCAGAGCTATACAGATAAACCCTGACTTGAAAAAAAAA
AGAGAAAATGAAAAAGAAATTTGGAATATAATTGAGAATAAAACAGATGT
CTATATCTGGCCTCCTTATGCACCCATATACTGAAATGTATACACTCCAT
TTTTATCCTGAAACTTTATATGATTTACACAATCCATTAAAATTATGTTT
TTTTGTTGCTCTTTTATTTGTTTGTTTGTTTGTTTCTGTTTCTGGAAATA
GACAACATTAACAAAGTCATTTTTTATACTCTCCATTATATAGTAAAATT
AAACATCTATCATGAGAAATGGTCCAGCACACCTTAAAACACACACAGGA
TAGGAATGGAAAGATGCCTTAGAAATTAAGAACACTTGTTTCTCTTGGAC
AGAACCAAGGTTTAGTTCCTAGAACCCTCATAATACTCAAAACCATTTTT
AATTCTAGATGCAGGGATTTTGGCATCCTATTCTAGTTTCTAGGGGAACT
AGTCATACATGTTATATAAATACAAACATGCAAAAACACTTTAGTTTAAA
AAAAAACAAAAACAAACAAAAAAAAAACCAAAAAAACAAACAAACAAACA
AACAAACTAAAAAACAATTTAGAGTTACACAGA

ACTGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTTCTGCCCGTCTCGGGATTAGTGATAGA
TCTAAGATTCTCTAAAATAGGAGGATGGTGATAAGAGCTTCATAGGATTG
TATAGAATAGTTTTATCCTGTTATTCCTATGTCTGCAGCACTATTGATCA
GAAATTGAACATTGATTGATACCTTGAGAATTATAGGACATTCCAGGTAC
TTACTCCTTCATCAGCTCCAAACATGAAATCACAATCAAGAATACACATC
ATCTGAATGTCAGTGGTAGGCATGACAACAATCTTAGAAGTCTTAGAAGA
GGGTGTAATGTAGTATTTTCTGGTTTAGTGTCTTCCTTAAATATATGTCC
CTCCACACATTCCTCTGCATGGAGGCCAGGATGTCTCTGTCTAAGGAAAC
AAAACAAAGATAGTAATCTGATTTACCCTTACCTTGACACTCTTCTGTTT
GAGATTTCAGTCCAGAGTGTTCTGAAATCTCTTAGGTCAGAACAGTGCTT
CCCACACCATGGAAATTAGAAGTTATAGGTAGGACATACACTGGGTAAGA
TGGTGAATCTGGGGGATTTCCTCAAACACACTGTGCTCCACACAGGTTGG
AGCACTCTTTGTTGTGAATGTCTAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no065_e19.b1 MSMg01no065_e19.b1 CHROMAT_FILE:
MSMg01no065_e19.b1 PHD_FILE: MSMg01no065_e19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:10:46 2005
         (606 letters)



>mm_chrY_2794632_2795643
          Length = 1012

 Score =  292 bits (151), Expect = 5e-83
 Identities = 360/447 (80%), Gaps = 50/447 (11%)
 Strand = Plus / Minus

                                                                       
Query: 67  aaaaagaa-atttggaatataattgagaataaaacagatgtctatatctggcctccttat 125
           ||||| || ||||||||||||||| || ||||||||| ||||||| |||| |||||||||
Sbjct: 856 aaaaa-aatatttggaatataatttaggataaaacagttgtctatttctgacctccttat 798

                                                                       
Query: 126 gcacccatatactgaaatgtatacac-tccatttttatcctgaaa--ctttatatgattt 182
           |||| |||||||||||||||||| || | | ||||| | ||||||  |||| || |||||
Sbjct: 797 gcacacatatactgaaatgtatatacat-cgttttt-tgctgaaactctttttacgattt 740

                                                                       
Query: 183 acacaatccattaaaattatgtttttttgttgctcttttatttgtttgtttgtttgtttc 242
           |||||||| ||| ||||||||       | || ||  |||                ||||
Sbjct: 739 acacaatctattcaaattatg-------g-tgttc--tta----------------tttc 706

                                                                       
Query: 243 tgtttctggaaatagacaacattaacaaa--gtcat-ttttta-tactctccattatata 298
           | |||||||||||||| || ||||| |||  || || |||||| || |||||| | ||||
Sbjct: 705 t-tttctggaaatagaaaatattaagaaagtgttatatttttatta-tctccactgtata 648

                                                                       
Query: 299 gtaaaattaaacatctatc-atgagaaatggtccagcacaccttaaa--acacacacagg 355
           ||||||||||||||||||| | |||||||| |||| || || |||||  |||||||||||
Sbjct: 647 gtaaaattaaacatctatcga-gagaaatgatccaacatactttaaaacacacacacagg 589

                                                                       
Query: 356 ata-ggaatggaaagatgccttagaaattaagaacacttgtttctcttggacagaaccaa 414
             | ||||| |||||||| |||||| ||||||| ||| |||| |||||||||||||||||
Sbjct: 588 gcagggaat-gaaagatgacttagatattaagagcac-tgttgctcttggacagaaccaa 531

                                                                       
Query: 415 ggtttagttcctagaaccctcataata--ctcaaaaccatttttaattctagatgcaggg 472
           |||||||||||||| |||| ||||| |  |||| ||| ||||||||||| |||| |||||
Sbjct: 530 ggtttagttcctaggacccacataa-aggctcacaacaatttttaattcaagatccaggg 472

                                      
Query: 473 -attttggcatcctattctagtttcta 498
            |||||| |||||||||||||||||||
Sbjct: 471 cattttgccatcctattctagtttcta 445


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 606
Length of database: 1012
Length adjustment: 10
Effective length of query: 596
Effective length of database: 1002
Effective search space:   597192
Effective search space used:   597192
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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