Query= MSMg01no067_i19.b1 MSMg01no067_i19.b1 CHROMAT_FILE:
MSMg01no067_i19.b1 PHD_FILE: MSMg01no067_i19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:13:41 2005
(319 letters)
>mm_chrY_1796180_1796897
Length = 718
Score = 188 bits (97), Expect = 5e-52
Identities = 242/295 (82%), Gaps = 17/295 (5%)
Strand = Plus / Plus
Query: 8 ttccagaaagcaatttagtagatttgattaatgtctccttacatcacatagatattttct 67
|||||||||||| ||| | || |||| || ||||| || |||||||| | |||||||||
Sbjct: 212 ttccagaaagcagcttacttgagttgacta-tgtcttctaacatcacaaaaatattttct 270
Query: 68 acagt-g-cata-t-aaccacatatattttagaatatactgaaacttaaaaatgtaaatt 123
|| || | |||| | ||| ||||||||||||||| |||| ||||||| |||||| ||||
Sbjct: 271 acggtagacataatgaac-acatatattttagaaaatacagaaacttgaaaatggaaatg 329
Query: 124 aaaaaaaaaacaaaaacctctaccaacttc--aaattaaaaaaacacatttattttagaa 181
||||||| | |||||| |||| || ||||||| ||||||||||||||||
Sbjct: 330 gaaaaaaattc------ctctactgacttttgaatttaaaaa--cacatttattttagaa 381
Query: 182 ttctctaggatactcgcaatttcctgtattccctactcatgatgtccatatgttagcatc 241
||||||||| || | ||||||||| ||| |||||||||||| |||||||||||||||||
Sbjct: 382 ttctctagggtatttgcaatttcccatataccctactcatgacgtccatatgttagcatc 441
Query: 242 ttacaaatttgtatgacaataatgaggagaaaataaaatttgtaaggaaaaaaaa 296
||||||||||||||| ||||||||||||| || ||| ||| |||| ||||||||
Sbjct: 442 ttacaaatttgtatggcaataatgaggagtaattaacctttttaag-aaaaaaaa 495
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 718
Length adjustment: 9
Effective length of query: 310
Effective length of database: 709
Effective search space: 219790
Effective search space used: 219790
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no067_i19.g1 MSMg01no067_i19.g1 CHROMAT_FILE:
MSMg01no067_i19.g1 PHD_FILE: MSMg01no067_i19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:13:41 2005
(237 letters)
>mm_chrX_53525073_53525714
Length = 642
Score = 197 bits (102), Expect = 4e-55
Identities = 166/190 (87%), Gaps = 5/190 (2%)
Strand = Plus / Minus
Query: 10 tttgtgctccattaaaaaggtactcacattcactattttgatgcctttctttctatttga 69
||||| ||||||| ||||||| || |||||||| | |||||||||| || |||||||||
Sbjct: 399 tttgttctccatttaaaaggtccttacattcacaaatttgatgcctgcctgtctatttga 340
Query: 70 gtgtgctttgtacttttgtctgctatatgttgtgttctgtgttctttgttactaactcta 129
|||||||||||||||||||||||| | ||||||||||||||| ||| |||||||||||||
Sbjct: 339 gtgtgctttgtacttttgtctgctgtgtgttgtgttctgtgtccttggttactaactcta 280
Query: 130 gggttcttcccatacttggaaaatgaaagtc-----agtttgaaaacctttcatatttgt 184
||| ||| ||||||||| ||||||||| || |||||| |||||||||||||||||
Sbjct: 279 cggtccttaccatacttgcaaaatgaaactctcctcagtttgcaaacctttcatatttgt 220
Query: 185 tctctgtata 194
||||||||||
Sbjct: 219 tctctgtata 210
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 237
Length of database: 642
Length adjustment: 9
Effective length of query: 228
Effective length of database: 633
Effective search space: 144324
Effective search space used: 144324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
