BAC Information

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BAC

Clone NameMSMg01-067O04
ChromosomeY (Build37)
Map Location 246,612 - 247,173
singlet/doubletsinglet
Overlap geneJarid1d
Upstream geneLOC100039202, Zfy1, Ube1y1, Rhoay-ps3
Downstream geneEif2s3y, Tspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278, EG667079
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-067O04.T7 (MSMg01no067_o04.b1)MSMg01-067O04.TJ (MSMg01no067_o04.g1)
ACCAG292513AG292514
length699699
length of high quality
(start - end)
317 (43 - 359)562 (74 - 635)
definitionCHROMAT_FILE: MSMg01no067_o04.b1 PHD_FILE: MSMg01no067_o04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:07 2005CHROMAT_FILE: MSMg01no067_o04.g1 PHD_FILE: MSMg01no067_o04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCGCGGAA
TTCTTCTGGGACCATTTTCTTAGAGCACAAAGAAGCTGTGTTCCAGAGAT
AGCCAAGGTTATACCTCGTGCTGCTACTGGACTTGGTTATGCTTAAGGAT
CACCTAGGTGATACAGGAATTGAAGGCATGATGGTGTCATGAAGAGCAGC
TGAGCCTTGACACTGAGAGGCCATGGAAGGCCACTGGTGAAAGTGCAGCC
TCAGTTGCAGTTGATGGACCAGGACTGAAGGGGTCATGCAAAGAAATTGA
GGTGTAAGCACAATAAAGAGAGCCTATGAGTTGCAGCAGAAGTCCTCAGT
GTATTGTATATTCCAGTGCCATACGATGATCACCAAGAACAGCAGCAGCA
GCAGAGAAGTGGGGTCATCCAGAGCCTATAGTATTACAGAGGGCAGAGCT
GGAGAAGTGATGCCAGCCCTTTGGAGGAGGTCAGAAAATCATGTGTGGAT
CCCAGACATTAGAACAAGAGTCTGTGAAGTTGAAGTTGAGTTTGAGACCC
CTAGATGTTAAAGATGCCAGTGCTGTATGCTAATTGCCAAGGAGAGCTGC
TAATAGGGAGTGGAACCAATAAAAAGAAGTTTGTTGTTGTCAACAAAGAT
GAACAGGGAGTTGGAGATCTAAAGACTGTGTTGACTTCATACATGCAGA
CGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTATATGTGCATGTAATATGTTTTCATC
AAATCTTACTTTAACTCTATTCCCATAAATCCCCTTCCACTTCCCCTTTC
AGGTTTATGTGTTCATTTTTAAACTCACTGCATGCACTTAGTGCTTGCTA
GTTACTATATGGGTGAAGATTCATGTACGAAATGGATAGCTTATCTGGGG
CTGCATTGACTTTTCTAAGGTATTCTGCTAATAATAATTCTAGACATTCT
CTATAAATTATTATGTCCTTTTATTTACTGTCTCCTTTGAATTTTTTAAT
AGCCAGAACCCACAGAAGAAGACATTGAGAAAAACCCAGAGCTAAAGAAA
CTACAGATATATGGGGCAGGCCCCAAGATGATAGGCTTGGGCCTCAAGGC
TAAGGAGAAAACTCTGAGAAAGAAAGATAGCAAACAACCAGGTGAAATTT
AAATACTAATCAGTGGTATAGTAAAAAACCATAAGATGTTTGTTAATTGT
GATGTAAAAAGTCTGTTTCACTTACTTTTGATCCTCCTAGATAAAGAAGA
AGTGACATGCCCTGCAACTATTGTAGTGAAGGGGGAAGCCAGTGAGTTTG
GAAAGGTGACATCAGCATTTTCAGACAAGAACCTATTTCACAGTTTTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no067_o04.g1 MSMg01no067_o04.g1 CHROMAT_FILE:
MSMg01no067_o04.g1 PHD_FILE: MSMg01no067_o04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:14:07 2005
         (562 letters)



>mm_chrY_246412_247373
          Length = 962

 Score = 1087 bits (562), Expect = 0.0
 Identities = 562/562 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tatatgtgcatgtaatatgttttcatcaaatcttactttaactctattcccataaatccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tatatgtgcatgtaatatgttttcatcaaatcttactttaactctattcccataaatccc 260

                                                                       
Query: 61  cttccacttcccctttcaggtttatgtgttcatttttaaactcactgcatgcacttagtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttccacttcccctttcaggtttatgtgttcatttttaaactcactgcatgcacttagtg 320

                                                                       
Query: 121 cttgctagttactatatgggtgaagattcatgtacgaaatggatagcttatctggggctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttgctagttactatatgggtgaagattcatgtacgaaatggatagcttatctggggctg 380

                                                                       
Query: 181 cattgacttttctaaggtattctgctaataataattctagacattctctataaattatta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cattgacttttctaaggtattctgctaataataattctagacattctctataaattatta 440

                                                                       
Query: 241 tgtccttttatttactgtctcctttgaattttttaatagccagaacccacagaagaagac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtccttttatttactgtctcctttgaattttttaatagccagaacccacagaagaagac 500

                                                                       
Query: 301 attgagaaaaacccagagctaaagaaactacagatatatggggcaggccccaagatgata 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 attgagaaaaacccagagctaaagaaactacagatatatggggcaggccccaagatgata 560

                                                                       
Query: 361 ggcttgggcctcaaggctaaggagaaaactctgagaaagaaagatagcaaacaaccaggt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggcttgggcctcaaggctaaggagaaaactctgagaaagaaagatagcaaacaaccaggt 620

                                                                       
Query: 421 gaaatttaaatactaatcagtggtatagtaaaaaaccataagatgtttgttaattgtgat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gaaatttaaatactaatcagtggtatagtaaaaaaccataagatgtttgttaattgtgat 680

                                                                       
Query: 481 gtaaaaagtctgtttcacttacttttgatcctcctagataaagaagaagtgacatgccct 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gtaaaaagtctgtttcacttacttttgatcctcctagataaagaagaagtgacatgccct 740

                                 
Query: 541 gcaactattgtagtgaaggggg 562
           ||||||||||||||||||||||
Sbjct: 741 gcaactattgtagtgaaggggg 762


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 562
Length of database: 962
Length adjustment: 10
Effective length of query: 552
Effective length of database: 952
Effective search space:   525504
Effective search space used:   525504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)