BAC Information

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BAC

Clone NameMSMg01-068J13
ChromosomeY (Build37)
Map Location 1,311,452 - 1,311,882
singlet/doubletsinglet
Overlap genenone
Upstream geneEif2s3y, Tspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278, EG667079
Downstream geneLOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-068J13.T7 (MSMg01no068_j13.b1)MSMg01-068J13.TJ (MSMg01no068_j13.g1)
ACCAG293054AG293055
length711722
length of high quality
(start - end)
441 (60 - 500)456 (71 - 526)
definitionCHROMAT_FILE: MSMg01no068_j13.b1 PHD_FILE: MSMg01no068_j13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:04 2005CHROMAT_FILE: MSMg01no068_j13.g1 PHD_FILE: MSMg01no068_j13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:04 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
CGGCGCTATACGACTCCTATAGGTACAGAATCCGCGGAATTCATTGTTTT
TATTACCTGTGTAGTAATTCATTAAGTAAATGTGCCATATTTTCTATATA
CATTCCTCTAAAGAGAGTCATCTGGGTTCATTTCAGCTTCTTGTTATTAT
ACAAAAGGCTGCTATGGACAAAGTGAAGCATGTTTCCTTATTACAAGTTT
GAACTTCTGGGTATAACCTTATCAGTTTATGAGGTCCCATTTGTCCATTT
TTAATCTTATAGCACAAGATATTGGTAGTATTTTTTTTCAAGAATATCCC
CCCTTTGCCCATGTATTCCAGGCTATTCCCCACTTTCTCCTCTATAAGTT
TCAGTGTCTCTGGTTTTATGTGCAGTCCCTTGATCGACTTAGACTTGAGC
ATTGCACAGGGGATGAGAATAGATCAATTTACATTCTCCTACATGCGAAC
TGCCAATTGAACCAACACCATTTGTTGAAAATGCTGTCTCCTTTCCACTA
GATGGTTTTAGCTCCTTTGTCAAAGATCAAGTGACTAAAGGTTTATTTCT
CTGACTTCAGTTCTATTTCATTTATCTACCTGTCTACCACTATACCTGTA
CCATGTAGTGTTTATCAAAATTGCTTTGTATTGCACTTTGAGGTCAGGTA
TGGCGTATTCTTTAGATGTTCTTTTATTGTTGGGAATAGTTTTTCCTAAC
CTAGTTTTTGT
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCATCAAAAAAATTGTATGAAGTTCTCAAGG
AATTAATTAATGTAGTTCTTAATATACAATGTCTGTACTGAACATATACA
GACCACTTATATTTCAATCTCCTAAATAGCAACTCATTTTATAGCACTTA
CATTACATTAAGTGCAAAAGTAATCCAGAGATTATTTAAAATAAAGAAGG
ATCAGGGAATATGGCCCAGAGACAATGCCAGGAGTGTGTTCAAACATTCA
CCTACAACACCAGTGCTTAAGATTTTGGGAGGGGCAGAGACAGGAAGATG
ATTGTGGCTTCCTGAAAGCCAGGCTCACTACCAGCTCAGCAAGAAACCCA
GTCACAAGGGGATAAGTTATGGAGGAAAAGAGTAGATCACACTATACCCT
TCCCTAGCCTCTGAACTTACCTGTACAGTTCTCTATGCAGACTCACATAA
ATATGATTAAAATATGCAAGAGGTTATTTTGCATAGCTTATGTTCAAAAG
CAGTGTTGTTTTAGACTAGAAACCTGAGGACTTTATATCATTATAGTTCC
CGGAGCAAACTCCCATGATATAGATGATGGGTATATCTTCCTACTGTGCT
AAGGAAACCTCAGTTAAGTGTGTGTGTCAGTGACTTCCAAAAGCTTTCCT
CCTCCAAGTGCCTTTAAATAGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no068_j13.g1 MSMg01no068_j13.g1 CHROMAT_FILE:
MSMg01no068_j13.g1 PHD_FILE: MSMg01no068_j13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:15:04 2005
         (456 letters)



>mm_chrY_1311029_1311882
          Length = 854

 Score =  369 bits (191), Expect = e-106
 Identities = 378/447 (84%), Gaps = 28/447 (6%)
 Strand = Plus / Minus

                                                                       
Query: 22  ttctcaaggaattaattaatgtagttcttaatata-ca-atgtctgtactgaacatatac 79
           |||||||||||||||| || || |||||| ||||| || |  ||||||||||||||||||
Sbjct: 854 ttctcaaggaattaataaaagtggttctttatataccaca--tctgtactgaacatatac 797

                                                                       
Query: 80  agaccacttatatttcaatctcctaaatagcaactcattttatagcacttacattacatt 139
           |||||||||||||| | |||||||||||| |||||| || ||||||| || |||| ||||
Sbjct: 796 agaccacttatattgccatctcctaaataacaactccttgtatagcagtttcattgcatt 737

                                                                       
Query: 140 aagtgcaaaagtaatccagagattatttaaaataaagaaggatcag-ggaatatggccca 198
           ||| ||||||||||||||||||| ||||||||||||||| || | | |||  ||||||||
Sbjct: 736 aagggcaaaagtaatccagagatcatttaaaataaagaaagacctgtggag-atggccca 678

                                                                       
Query: 199 gag--acaatgccaggagtgtgt--tcaaacattcacctacaacaccagtgcttaagatt 254
           | |  |    ||||  |||| ||  ||  |||||||||||||||| ||||||||| ||| 
Sbjct: 677 ggggta----gcca--agtgagtgatcccacattcacctacaacaacagtgcttaggatg 624

                                                                       
Query: 255 ttgggaggggcagagacaggaagatgattgtggcttcctgaaagccaggctcactacc-a 313
             ||||||||||||||||||||||||| |||||||||||||||||||| | |||| || |
Sbjct: 623 --gggaggggcagagacaggaagatgactgtggcttcctgaaagccagccccact-ccta 567

                                                                       
Query: 314 gctcagcaagaaacccagtcacaagggga-taagttatggag-gaaaagagtagatcaca 371
           ||||||||||| |||  |||||||||| | ||| ||| |||| |||  ||| ||| ||||
Sbjct: 566 gctcagcaagagacctggtcacaaggg-agtaaattagggagtgaag-gagcagagcaca 509

                                                                       
Query: 372 ctatacccttccctagcctctgaacttacctgtacagttctctatgcagactcacataaa 431
           | ||||||||||||||||||||||||||||||||||| ||| |||||| || ||||||||
Sbjct: 508 caatacccttccctagcctctgaacttacctgtacaggtctgtatgcatacacacataaa 449

                                      
Query: 432 tatgattaaa--atatgcaagaggtta 456
           ||||||||||  ||||  |||||||||
Sbjct: 448 tatgattaaagtatat--aagaggtta 424


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 456
Length of database: 854
Length adjustment: 10
Effective length of query: 446
Effective length of database: 844
Effective search space:   376424
Effective search space used:   376424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)