BAC Information

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BAC

Clone NameMSMg01-069O01
ChromosomeY (Build37)
Map Location 1,752,484 - 1,752,714
singlet/doubletsinglet
Overlap genenone
Upstream geneUsp9y, LOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401
Downstream geneLOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236, EG631479, LOC667244
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-069O01.T7 (MSMg01no069_o01.b1)MSMg01-069O01.TJ (MSMg01no069_o01.g1)
ACCAG294032AG294033
length677686
length of high quality
(start - end)
236 (113 - 348)283 (69 - 351)
definitionCHROMAT_FILE: MSMg01no069_o01.b1 PHD_FILE: MSMg01no069_o01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:45 2005CHROMAT_FILE: MSMg01no069_o01.g1 PHD_FILE: MSMg01no069_o01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:45 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
CCGCTATACGACTCACTATTTTCAGAGGATCCGCGGAATTCTATTGTATC
TCTTTTTATGATATGAAACATAACTCTCCCAAATTTTCTAGATTTTAAAC
CTTCTTTACCTTCTGTCCCTGCAATATGCTAATTTTCCTTAGCTTGGCCA
TTCTGTCTGAGTTTTCTGACTAAGTACATTCTGGTGTCTGAGAAGCCTTG
ATCATCTGTTAAACATTTTCTCACACAGGTTACATGTATAGGGATGGTCA
GCAATGTGGGTCAGCTGGTGCTTAATGAGGTGACATTTTTGAAGGAATGG
TCTCCTACATTCAATACAGTTAAACAGGATTCTCTCCTGTATAATATTTT
TCATGTTCAACTAACTTTGTATTATGATTAAAGGTTTTCTGGCAACAGGA
ACACAGATGTAGATTTATTTCTTAGTGAGTCAGATAATGTATTTTAAAAT
CTGAACGGTGTTTTTCTGTGTGTGAGGGTGCATGTGTGTGTGTGTGTGTG
TGTGTGTGATATGTATTCAGAATCCAAAGAGACCAGAAGACTTATAGACC
CTAGTAGGTTTTTATTCTTGATTTTTTTTTGGTCTTTTGGTCTGCCTTGC
CTTGTCCTCTAAAAAAGTTTGCTTGTTTACCCCTGGCTTTCCTAAAACTC
ACTCTGTAAATTCAGGTGGCCTCCTAT
CATGAAGTGGGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAAAACTCATTTGGTCCCTGGAATGAAGTTAAA
GGTCCCTCTGTAGCCTTAGAGAGGTCAAAAGGCTCTTCTGTGGAAAGGGA
AGATCCAAAAGGCTTAGGGAAGAAAGTGAGGAACTAAGTTGGGCAGAAAT
TGCAAGTTCCAGAGGTGAGTCATTGGATATCACATGTCCTGGGGTAGCTG
TTGAAAATTTTTGTGCTCCTCATGCAAATGATGAATATCCTAGAGCCCCC
TGGGGAGGCAGTAATGTTTCTACAGAGCCTGTGTATTTGCTGAAATCCTC
ATAGATCCCTGGTCAGATCTCAAAATCCTTGCTGTATTTTGAGCAGGGTG
GTTATATCCCTGACACACTGATAAAGATGGTGAGTCTGCTACTGTGTAGT
GTGTAGATGTGGAGTGAGTTCCTATACCTTGTGTATGTAAAGAAGGACTT
GAAAACCTTTTGGAATATGTAGAATGTTGGGTAGACCTTTGTGGACATGT
GGACAGATGTATGGTCTCCTTGTGCAGAGACCGGGACTCATACCTCCTTT
GACAGAATCATAAGACCCTGGAGTCCTCTGTCCTGACGTTGAATGACCCT
TACCATCATGACAACTTTCCTACCTTTGCGCCGCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no069_o01.b1 MSMg01no069_o01.b1 CHROMAT_FILE:
MSMg01no069_o01.b1 PHD_FILE: MSMg01no069_o01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:16:45 2005
         (236 letters)



>mm_chrY_1752284_1752920
          Length = 637

 Score =  261 bits (135), Expect = 2e-74
 Identities = 208/233 (89%), Gaps = 5/233 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgtccctgcaatatgctaattttccttagcttggccattctgtctgagttttctgacta 60
           ||||||||| |||||| |||||||||||||| |||  ||||||| ||||||| |||||||
Sbjct: 201 ctgtccctgaaatatggtaattttccttagcctgggaattctgtttgagtttcctgacta 260

                                                                       
Query: 61  agtacattctggtgtctgagaagccttgatcatctgttaaacattttctcacacaggtta 120
            |||  ||||||||||||||||| ||||||| |||||||||| |||||||||||||||||
Sbjct: 261 tgtatgttctggtgtctgagaaggcttgatcgtctgttaaacgttttctcacacaggtta 320

                                                                       
Query: 121 cat-gtatagggatggtcagcaatgtgggtcagctggtgcttaatgaggtgacatttttg 179
           ||| |||||||||||||||||||||||||||||||| || ||||||||||||||||| ||
Sbjct: 321 cattgtatagggatggtcagcaatgtgggtcagctgttgtttaatgaggtgacatttctg 380

                                                                
Query: 180 aaggaatggtctcctacatt-caatacagttaaacagga-ttctctcctgtat 230
           |||||||||||||| | ||| || || |||||||  ||| |||||||||||||
Sbjct: 381 aaggaatggtctcccaaatttcagtaaagttaaa--ggacttctctcctgtat 431


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 236
Length of database: 637
Length adjustment: 9
Effective length of query: 227
Effective length of database: 628
Effective search space:   142556
Effective search space used:   142556
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)