BAC Information

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BAC

Clone NameMSMg01-072O17
ChromosomeY (Build37)
Map Location 1,311,370 - 1,311,882
singlet/doubletsinglet
Overlap genenone
Upstream geneEif2s3y, Tspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278, EG667079
Downstream geneLOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-072O17.T7 (MSMg01no072_o17.b1)MSMg01-072O17.TJ (MSMg01no072_o17.g1)
ACCAG296343AG296344
length701702
length of high quality
(start - end)		559 (40 - 598)537 (70 - 606)
definitionCHROMAT_FILE: MSMg01no072_o17.b1 PHD_FILE: MSMg01no072_o17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:20:49 2005CHROMAT_FILE: MSMg01no072_o17.g1 PHD_FILE: MSMg01no072_o17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:20:49 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATCCGCGGAATTCA
TCCAGTATCCTCTTCTCTTCTATTTGGTTAGAGCTGACTCAAACCTGCAA
GGTCCAGGACAGAAAAAATAGACTCCCTCATCCAATTTGGTATGTGTGTT
TCCAGGTAGTGTTACAGATCCTAACATGCTTAGACCACTAAAATAGAGCA
CATCTATTCTACCACAGTTACGGAAGGCAACATTGTAAAAATCAAGGGGC
TGGCTAGTTTTCCTAGTTGCTGGCACTGTGGTTGGCAACCTGTAGGTTGC
TAGTCCTTGTGACAAATTTCACAGGAGTTGTCCTAGACTATCTGTATGTC
AGAAATGTATGTTACAATTCATATCAGTAGGACATTTCAGTTATGAAGCA
GCAAAAAATATTTTTACGGTTGGGGCACACACAGCATAAGGAAGTATATA
TATGAAGGAACCGCAGTATTAAAAAGGTGGAGAACCACTCTATTGAACTT
TGAAAACTGAAGCATGGTGTGCCTCCCAGACTGTCTTTGACATGAGTCTG
AGATATACTTCTGACTCTGATCTTCTTGTTACCTTTTGTTTCTTGTGATC
ATATGGGGTTAACCTAGAAAGTATATTCATATGCACTATGTGAGATCATG
TTCAGAATTCATTTTGTGAAGCAATGTGCTCTAGTATATTTAGGACAGAG
C

TGAAGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCATCAAAAAAATTGTATGAAGTTCTCAAGGA
ATTAATTAATGTAGTTTTTAATATACAATGTCTGTACTGAACATATACAG
ACCACTTATATTTCAATCTCCTAAATAGCAACTCATTTTATAGCACTTAC
ATTACATTAAGTGCAAAAGTAATCCAGAGATTATTTAAAATAAAGAAGGA
TCAGGGGATATGGCCCAGAGACAATGCCAGGAGTGTGTTCAAACATTCAC
CTACAACACCAGTGCTTAAGATTTTGGGAGGGGCAGAGACAGGAAGATGA
TTGTGGCTTCCTGAAAGCCAGGCTCACTACCAGCTCAGCAAGAAACCCAG
TCACAAGGGGATAAGTTATGGAGGAAAAGAATAGATCACACTATACCCTT
CCCTAGCCTCTGAACTTACCTGTACAGTTCTCTATGCAGACTCACATAAA
TATGATTAAAATATGCAAGAGGTTATTTTGCATAGCTTATGTTCAAAAGC
AGTGTTGTTTTAGACTAGAAACCTGAGGACTTTATATCATTATAGTTCCT
GGAGCATACTCCCAAAATATAGATGATGGGTATATCTTCTTACTGTGCAA
AGGAAACCTCAGTTAAGTGTGTGTGTCAGTGACTCCAAACAGCTTTCCTC
CT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no072_o17.g1 MSMg01no072_o17.g1 CHROMAT_FILE:
MSMg01no072_o17.g1 PHD_FILE: MSMg01no072_o17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:20:49 2005
         (537 letters)



>mm_chrY_1310947_1311882
          Length = 936

 Score =  422 bits (218), Expect = e-122
 Identities = 447/530 (84%), Gaps = 31/530 (5%)
 Strand = Plus / Minus

                                                                       
Query: 22  ttctcaaggaattaattaatgtagtt-tttaatata-ca-atgtctgtactgaacatata 78
           |||||||||||||||| || || ||| ||| ||||| || |  |||||||||||||||||
Sbjct: 936 ttctcaaggaattaataaaagtggttcttt-atataccaca--tctgtactgaacatata 880

                                                                       
Query: 79  cagaccacttatatttcaatctcctaaatagcaactcattttatagcacttacattacat 138
           ||||||||||||||| | |||||||||||| |||||| || ||||||| || |||| |||
Sbjct: 879 cagaccacttatattgccatctcctaaataacaactccttgtatagcagtttcattgcat 820

                                                                       
Query: 139 taagtgcaaaagtaatccagagattatttaaaataaagaaggatcaggggatatggccca 198
           |||| ||||||||||||||||||| ||||||||||||||| || | | ||| ||||||||
Sbjct: 819 taagggcaaaagtaatccagagatcatttaaaataaagaaagacctgtggagatggccca 760

                                                                       
Query: 199 gag--acaatgccaggagtgtgt--tcaaacattcacctacaacaccagtgcttaagatt 254
           | |  |    ||||  |||| ||  ||  |||||||||||||||| ||||||||| ||| 
Sbjct: 759 ggggta----gcca--agtgagtgatcccacattcacctacaacaacagtgcttaggatg 706

                                                                       
Query: 255 ttgggaggggcagagacaggaagatgattgtggcttcctgaaagccaggctcactacc-a 313
             ||||||||||||||||||||||||| |||||||||||||||||||| | |||| || |
Sbjct: 705 --gggaggggcagagacaggaagatgactgtggcttcctgaaagccagccccact-ccta 649

                                                                       
Query: 314 gctcagcaagaaacccagtcacaagggga-taagttatggag-gaaaagaatagatcaca 371
           ||||||||||| |||  |||||||||| | ||| ||| |||| |||  ||  ||| ||||
Sbjct: 648 gctcagcaagagacctggtcacaaggg-agtaaattagggagtgaag-gagcagagcaca 591

                                                                       
Query: 372 ctatacccttccctagcctctgaacttacctgtacagttctctatgcagactcacataaa 431
           | ||||||||||||||||||||||||||||||||||| ||| |||||| || ||||||||
Sbjct: 590 caatacccttccctagcctctgaacttacctgtacaggtctgtatgcatacacacataaa 531

                                                                       
Query: 432 tatgattaaa--atatgcaagaggttattttgcatagcttatgttcaaaagcagtgttgt 489
           ||||||||||  ||||  |||||||||| |||||||| |||| | |||||||| ||||||
Sbjct: 530 tatgattaaagtatat--aagaggttatgttgcatagattatatgcaaaagcaatgttgt 473

                                                             
Query: 490 tttagactagaaacctgaggacttt-atatcattat-agttcctggagca 537
            |||| ||||  ||||||||||||| |||||||||  ||| |||||||||
Sbjct: 472 cttagcctagggacctgaggacttttatatcattaggagt-cctggagca 424


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 537
Length of database: 936
Length adjustment: 10
Effective length of query: 527
Effective length of database: 926
Effective search space:   488002
Effective search space used:   488002
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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