BAC Information

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BAC

Clone NameMSMg01-082C09
ChromosomeY (Build37)
Map Location 503,573 - 503,929
singlet/doubletsinglet
Overlap geneUty
Upstream geneLOC100039202, Zfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y, Tspy-ps
Downstream geneDdx3y, LOC100042763, LOC385246, Usp9y, LOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-082C09.T7 (MSMg01no082_c09.b1)MSMg01-082C09.TJ (MSMg01no082_c09.g1)
ACCAG302585AG302586
length687674
length of high quality
(start - end)
121 (81 - 201)357 (73 - 429)
definitionCHROMAT_FILE: MSMg01no082_c09.b1 PHD_FILE: MSMg01no082_c09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:31:33 2005CHROMAT_FILE: MSMg01no082_c09.g1 PHD_FILE: MSMg01no082_c09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:31:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGNGG
AATTCCCTTATCACACGTAAGACTCTTGACATTTCCTATGATTTTTGAGA
ACAAAGTTTTAAAATTTTATTTATTTGTTTATTTTAAATATTCCCCTGAT
CCTTTGACTTGGTGTCAAGGATCTTTATAACTTTGGTTTTCTACTAAACT
TGCCCACCCACCATGCTTCTACGTATTTGGCATCTATATAGGCGCAACCC
ATTTCTCCTGAAGCTTTCATATTGTGCATTTTCTTCTTTAATAGTCTTGC
ACCTGTAGACCTTGAAAACTACTTAACTCTTGACTAAGTGAGAAGCTCAA
CATCCAAATGAGTAAACTTTAATAAACCCAGCACCGATTCCCTGACCTGT
TACCAACATCTTTTTCCACGACTCTGATCCGTATTAACAGCCTGCACGTA
ACTCGGCGTGCTGGCGCACGCCCTTTTATCCCAGCTCTTGTCCCGCCCAC
GCTCCCAGACTTCTGAGTCTCCAGGTCTGCGTTCCTCTACCCACTGAGTT
CCATGCACCCCCCCCTCTACTTCCAGAAATCGTGTTTCCCCCAACACCCC
CCTCCTATTTATCCTATTACTACCCTCCTTACCCCCTTTTACCCATTCAC
TCAGGCTCCTTACTAACACCCCCCGCTCCTGCCCCCC
AATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTGGAACTGGAATTCAGAGTTGTGAGCC
ATGATAATTGTGTTGGGAGTTGAACCTAGGTACTAAAGAGGAGCAGCCAG
TCCTTTTAACGGAGCCTTCTCTCCAGCTTCTGTACTTATTTTTATTATAT
GGTAATTACCACAATTTTGAGGCAGTTTAATGAATTTTTTAATTTGACTC
TAATGCCTTAAAATATAAATTGAAATTCTTCTACTACACAATAGAAAAAG
GCCTGTCCATTGCTTTTTTTAAAAGATTATTTTTACTTTATGTGCATTTG
AGATTCCTCACTATATATCTGTATATGAACAGCATGCTTAGTTTCCGTGT
AGGCTAGAATAAGGCATTGGTTCCCCTAGAACTGGAGTTTCATATCGTCA
TGAGCTGCCACATGGTTGCTTGTAATTGGATTCTGGTCCTCTAGAAGAGC
AGACCATGCTATTACGTTTGAGATATTTATCCCTCTCTAAATTTCTGATT
AATAATACAAAATATTCAGGTTGTTTTTCTTGACTGTCAACGGAAGTTTT
CTGTAAAACCTTTTCCAATTACAACTACTTTTTAAAAAACATACTTTCTT
TGTGGGTGTGCCTGCTTTCTTAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no082_c09.g1 MSMg01no082_c09.g1 CHROMAT_FILE:
MSMg01no082_c09.g1 PHD_FILE: MSMg01no082_c09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:31:33 2005
         (357 letters)



>mm_chrY_503265_504021
          Length = 757

 Score =  683 bits (353), Expect = 0.0
 Identities = 356/357 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctggaactggaattcagagttgtgagccatgataattgtgttgggagttgaacctaggta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 ctggaactggaattcagagttgtgagccatgataattgtgttgggagttgaacctaggta 606

                                                                       
Query: 61  ctaaagaggagcagccagtccttttaacggagccttctctccagcttctgtacttatttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 ctaaagaggagcagccagtccttttaacggagccttctctccagcttctgtacttatttt 546

                                                                       
Query: 121 tattatatggtaattaccacaattttgaggcagtttaatgaattttttaatttgactcta 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 545 tattatatggtaattaccacaattttgaggcagtttaatgaattttttaatttgacacta 486

                                                                       
Query: 181 atgccttaaaatataaattgaaattcttctactacacaatagaaaaaggcctgtccattg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 atgccttaaaatataaattgaaattcttctactacacaatagaaaaaggcctgtccattg 426

                                                                       
Query: 241 ctttttttaaaagattatttttactttatgtgcatttgagattcctcactatatatctgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 ctttttttaaaagattatttttactttatgtgcatttgagattcctcactatatatctgt 366

                                                                    
Query: 301 atatgaacagcatgcttagtttccgtgtaggctagaataaggcattggttcccctag 357
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 atatgaacagcatgcttagtttccgtgtaggctagaataaggcattggttcccctag 309


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 357
Length of database: 757
Length adjustment: 9
Effective length of query: 348
Effective length of database: 748
Effective search space:   260304
Effective search space used:   260304
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)