BAC Information

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BAC

Clone NameMSMg01-082G23
ChromosomeY (Build37)
Map Location 1,311,354 - 1,311,882
singlet/doubletsinglet
Overlap genenone
Upstream geneEif2s3y, Tspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278, EG667079
Downstream geneLOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-082G23.T7 (MSMg01no082_g23.b1)MSMg01-082G23.TJ (MSMg01no082_g23.g1)
ACCAG302804AG302805
length681680
length of high quality
(start - end)
404 (46 - 449)553 (74 - 626)
definitionCHROMAT_FILE: MSMg01no082_g23.b1 PHD_FILE: MSMg01no082_g23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:31:54 2005CHROMAT_FILE: MSMg01no082_g23.g1 PHD_FILE: MSMg01no082_g23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:31:54 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
TCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCTTCTAGCCTCTATGTGCACCACACATGCATGTTTATAAACACA
AACATGCAAAAACAAATTACTTAAATAAATAAAACAATTGAAAATTACAA
ACAACAGCACCTTCATCTGAAACAAAGTAGGAGAGTCTTGTTTGGGGTCC
GTTTTATTTTAGCTTTCAAGTTAGTATTGTAAACTTGCAAAATGGAAAAC
CTCTGGGTAGTAGTGGCAGCTAAAATACTACCTCCTTTTTGCTCTTCAAT
GACAGACGACTGATTGAGCCTTTCTCACCCTTAGTACACATGTGCAAACA
CTGCCAATCAGCAAGGGCCTTGGCTGAGATTGTTTTCCCGCTATCCAAAC
CCTGTTACCCAGTATGCTTTGTGGTAGTCATCAAGCCGAGTTCTTGTGGA
ACCAAGGTTCTTGAGGAAGCATGGTAGGGAGAACTCTCACCACAGGTAGT
CCATTGTCTGTTGAAAGATGATTAATACCTGTTTGAGCTGGGGGCCTGTG
TGGCGAAGAAGGTGGAGGGGTGGAGGCTTCTCCCCTCTTTTCTCTCTCCT
TTTTTCTTCTTCTCCTCCCATCTCTCTCCATTCTCCCTCACTTCTTTCTC
CCGCTCTTTCTCCTCTTTCGTTTCCCCCCCA
AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCATCAAAAAAATTGTATGAAGTTCTCA
AGGAATTAATTAATGTAGTTCTTAATATACAATGTCTGTACTGAACATAT
ACAGACCACTTATATTTCAATCTCCTAAATAGCAACTCATTTTATAGCAC
TTACATTACATTAAGTGCAAAAGTAATCCAGAGATTATTTAAAATAAAGA
AGGATCAGGGGATATGGCCCAGAGACAATGCCAGGAGTGTGTTCAAACAT
TCACCTACAACACCAGTGCTTAAGATTTTGGGAGGGGCAGAGACAGGAAG
ATGATTGTGGCTTCCTGAAAGCCAGGCTCACTACCAGCTCAGCAAGAAAC
CCAGTCACAAGGGGATAAGTTATGGAGGAAAAGAGTAGATCACACTATAC
CCTTCCCTAGCCTCTGAACTTACCTGTACAGTTCTCTATGCAGACTCACA
TAAATATGATTAAAATATGCAAGAGGTTATTTTGCATAGCTTATGTTCAA
AAGCAGTGTTGTTTTAGACTAGAAACCTGAGGACTTTATATCATTATAGT
TCCTGGAGCAAACTCCCAAGATATAGATGATGGGTATATCTTCTTACTGT
GCAAAGGAAACCTTCAGTTAAGTGTGTGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no082_g23.g1 MSMg01no082_g23.g1 CHROMAT_FILE:
MSMg01no082_g23.g1 PHD_FILE: MSMg01no082_g23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:31:54 2005
         (553 letters)



>mm_chrY_1310931_1311882
          Length = 952

 Score =  458 bits (237), Expect = e-133
 Identities = 463/545 (84%), Gaps = 29/545 (5%)
 Strand = Plus / Minus

                                                                       
Query: 22  ttctcaaggaattaattaatgtagttcttaatata-ca-atgtctgtactgaacatatac 79
           |||||||||||||||| || || |||||| ||||| || |  ||||||||||||||||||
Sbjct: 952 ttctcaaggaattaataaaagtggttctttatataccaca--tctgtactgaacatatac 895

                                                                       
Query: 80  agaccacttatatttcaatctcctaaatagcaactcattttatagcacttacattacatt 139
           |||||||||||||| | |||||||||||| |||||| || ||||||| || |||| ||||
Sbjct: 894 agaccacttatattgccatctcctaaataacaactccttgtatagcagtttcattgcatt 835

                                                                       
Query: 140 aagtgcaaaagtaatccagagattatttaaaataaagaaggatcaggggatatggcccag 199
           ||| ||||||||||||||||||| ||||||||||||||| || | | ||| |||||||||
Sbjct: 834 aagggcaaaagtaatccagagatcatttaaaataaagaaagacctgtggagatggcccag 775

                                                                       
Query: 200 ag--acaatgccaggagtgtgt--tcaaacattcacctacaacaccagtgcttaagattt 255
            |  |    ||||  |||| ||  ||  |||||||||||||||| ||||||||| |||  
Sbjct: 774 gggta----gcca--agtgagtgatcccacattcacctacaacaacagtgcttaggatg- 722

                                                                       
Query: 256 tgggaggggcagagacaggaagatgattgtggcttcctgaaagccaggctcactacc-ag 314
            ||||||||||||||||||||||||| |||||||||||||||||||| | |||| || ||
Sbjct: 721 -gggaggggcagagacaggaagatgactgtggcttcctgaaagccagccccact-cctag 664

                                                                       
Query: 315 ctcagcaagaaacccagtcacaagggga-taagttatggag-gaaaagagtagatcacac 372
           |||||||||| |||  |||||||||| | ||| ||| |||| |||  ||| ||| |||||
Sbjct: 663 ctcagcaagagacctggtcacaaggg-agtaaattagggagtgaag-gagcagagcacac 606

                                                                       
Query: 373 tatacccttccctagcctctgaacttacctgtacagttctctatgcagactcacataaat 432
            ||||||||||||||||||||||||||||||||||| ||| |||||| || |||||||||
Sbjct: 605 aatacccttccctagcctctgaacttacctgtacaggtctgtatgcatacacacataaat 546

                                                                       
Query: 433 atgattaaa--atatgcaagaggttattttgcatagcttatgttcaaaagcagtgttgtt 490
           |||||||||  ||||  |||||||||| |||||||| |||| | |||||||| |||||| 
Sbjct: 545 atgattaaagtatat--aagaggttatgttgcatagattatatgcaaaagcaatgttgtc 488

                                                                       
Query: 491 ttagactagaaacctgaggacttt-atatcattat-agttcctggagcaaactcccaaga 548
           |||| ||||  ||||||||||||| |||||||||  ||| |||||||||||||||| |||
Sbjct: 487 ttagcctagggacctgaggacttttatatcattaggagt-cctggagcaaactccccaga 429

                
Query: 549 tatag 553
           |||||
Sbjct: 428 tatag 424


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 553
Length of database: 952
Length adjustment: 10
Effective length of query: 543
Effective length of database: 942
Effective search space:   511506
Effective search space used:   511506
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)