BAC Information

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BAC

Clone NameMSMg01-087F13
ChromosomeY (Build37)
Map Location 2,889,636 - 2,889,866
singlet/doubletsinglet
Overlap genenone
Upstream geneUbe1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236, EG631479, LOC667244, LOC100039652
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-087F13.T7 (MSMg01no087_f13.b1)MSMg01-087F13.TJ (MSMg01no087_f13.g1)
ACCAG306403AG306404
length704696
length of high quality
(start - end)
292 (62 - 353)289 (75 - 363)
definitionCHROMAT_FILE: MSMg01no087_f13.b1 PHD_FILE: MSMg01no087_f13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:39:26 2005CHROMAT_FILE: MSMg01no087_f13.g1 PHD_FILE: MSMg01no087_f13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:39:26 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCAATATTCCCTGTAATACTTACTTTAAACAATTCATACATTTACACCC
CACAGCTCTTCTTCATAACTGTACTACCTTTGCTGAGAACCATCTTCTTC
CTAAATGGTCCCTCTCTTATTTTTATAATGGTTCTCCTTTTCTTTGTATG
TATATCTGGGTACATCTCATGCAGGTGGTTGTATTGTACTAGTTGCTATC
TTTGTGTGATCACAAGGTCTAAAGGACCACAATCTGTTCTTGATCTACTC
ATATAAGAGCATTTGACCCTGAATTGTTCTTTTTCCTGTATCTACTTCTC
CATTTATTGGATCACAAACACCACTTTTGAAGTACTCTATCAAAATGGGA
AAAAAATGAAAATATTAAACCATATCTTCATCTGTTTCTACCTGAGGTGA
TATATTCTCATCTTTGTCAAATGCTGTTCTCTGTACTGTATGGACAACAG
ACCATGTAAACATAATATGGCCTATTATCCACAGGGAACCCCGTATTAAT
GATCTGAATTTCTCAGGAAATAATGCCCATGTGAATTTTTGAAACAGCTT
TTTACAATTGACCTCATTACCTACCTGATATCCGGTAATATCCTATACAC
GACAATTACGGCTTCCCAATTTATCCGTTCATTTGAATATCTTCTACAAT
ATCA
CCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCATGACTTTTATCATG
AATGGGTGCTGGATTTCGTTAAATGATTTCTCAGCATCTAAGGAGATGAT
CATGCGGTTTTTGTTTTTGAGTTTGCTTATATATTGGATTACGTTGATGT
GTTTCCTTTTATTAAACCATCCCTGCATCACTGGGATGAAGCCTACTTGA
TCATTATTGATGATCTTTGTGATATGTTCTTAGATTCAGTTTGCATGGAC
TTTATTGAATATTTTTGCATCAATATTCATAAGGGAAATTGATCTGAAGT
CCTCTATTTTGTTGCGACTTTATATGGTTTAGTTATCAGAGAAATTTTGG
CTTCTATAGAACGAATTGAATAGAGTATGTTCTGTTCCTGTTTTGTGACA
TACCTTGAGAACAGCTGGAATTAGCTCTTTTTTGAAGGTCTGATAGAATT
CTGTACTAAACCCATGTGGGTGGTCCTGGGCATTATTTGGATAGGAGACT
ATTAGTGACTGCTCTATTTCTTCAGCGTATATGGGCTTGCCTATATCTTC
ATTCTGATTTGTATTGACTTTGTCCCCTGACTTCCGTCTAGAAAATTGTC
CGATTAATCCACGTTTCCACCTTTGTTTATCACCCCTTTTGCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no087_f13.b1 MSMg01no087_f13.b1 CHROMAT_FILE:
MSMg01no087_f13.b1 PHD_FILE: MSMg01no087_f13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:39:26 2005
         (292 letters)



>mm_chrY_2889435_2890126
          Length = 692

 Score =  331 bits (171), Expect = 4e-95
 Identities = 216/231 (93%)
 Strand = Plus / Minus

                                                                       
Query: 2   tgtaatacttactttaaacaattcatacatttacaccccacagctcttcttcataactgt 61
           ||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 432 tgtaatatttactttaaacaattcatacatttacaccccacagcacttcttcataactgt 373

                                                                       
Query: 62  actacctttgctgagaaccatcttcttcctaaatggtccctctcttatttttataatggt 121
           |||||| ||||||||| || ||||||||| ||||||||||||||||||||||||||||||
Sbjct: 372 actacccttgctgagatccttcttcttcccaaatggtccctctcttatttttataatggt 313

                                                                       
Query: 122 tctccttttctttgtatgtatatctgggtacatctcatgcaggtggttgtattgtactag 181
           ||||||||||||||| ||||||| |||  ||||||||||||||||||||||||||||| |
Sbjct: 312 tctccttttctttgtgtgtatatatggaaacatctcatgcaggtggttgtattgtactcg 253

                                                              
Query: 182 ttgctatctttgtgtgatcacaaggtctaaaggaccacaatctgttcttga 232
           ||||||| |||||||||  ||||||||||||||||||||||||| ||||||
Sbjct: 252 ttgctatgtttgtgtgaaaacaaggtctaaaggaccacaatctggtcttga 202


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)