BAC Information

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BAC

Clone NameMSMg01-087G15
ChromosomeY (Build37)
Map Location 1,792,304 - 1,792,585
singlet/doubletsinglet
Overlap genenone
Upstream geneUsp9y, LOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137
Downstream geneLOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236, EG631479, LOC667244, LOC100039652
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-087G15.T7 (MSMg01no087_g15.b1)MSMg01-087G15.TJ (MSMg01no087_g15.g1)
ACCAG306450AG306451
length674693
length of high quality
(start - end)
---420 (56 - 475)
definitionCHROMAT_FILE: MSMg01no087_g15.b1 PHD_FILE: MSMg01no087_g15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:39:32 2005CHROMAT_FILE: MSMg01no087_g15.g1 PHD_FILE: MSMg01no087_g15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:39:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTGGATCTTACCAAGTAAATGACCCTTCTACTGAAGATCATGACTCCTAA
TACATCAGGGGAATTGTGCTGGCGTATTATGTCTAACATTCCGTTCATGC
CTGTCATGCACAGTGCACAAGTTTTTCCACATTTCTTTACTACTGATATG
CACCTGGGACTTGCCTTTTTACCATTATATGGACACATTCAAGTTCTGAT
GCACAATATAACTTCTACCTCATAGGAAGCCTGTGCTTTGTAATGATCTC
TGACTTGACAGACCAACTCCTGTGTATATCCTTATAACATCAATCAGCGG
CCTGGTTGTATAGCAGCTGCTCCGCCAACCCACTCTGAAATAATATCCAA
TGCCTTGATAATTCACGGCTGGAGGCCTAGTCTTAAATCCAGGAAAGCAC
TGCCCCAGCAACCCATAACGGCACCCTTTTGTAAAGGAAGATCCTCATAG
GACTCCATGCTTCCTTGGACTGCGTGTCAGGCCCGAAAAACCCTTTGGGT
GCCTGAAGCATTTTTTTTCCTTTTCCCCACATGCAAGTGCACACCATTAA
CGATATCCTTTGCAGGAACTGATTTTAACTTCCTGGTATCTGAACCGTCC
CCATGTTAACCCTTTTTGATCAAT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXAGAAGCCAGCAGAGTTCGTGGACTGCAAGCAGGTCTTCTGAAAAA
CAATGCATGATATAATTACCTGAATTTTCTGGCAGTGCTCTTCAATATTG
TGTTCTACGTGATGCAATATTCCACTCTCTTTCTCTATCTCTGTCTCTGT
CTCTGTCCCTCTCTGTCTCTGTCTCTCTCTGTCTCTTTGTCTCTCTCTCT
GTCTCTCTGTATCTGTCTCTGTCTCTGTCTCTGTCTCTGTCTCTGTCTCT
GTCTCTGTCTCTGTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCT
CTCTCTGTCTGTCTCTCTCAATATCTATTCCTCTAACACTCAGTATGACT
AATGATTCTCTTATCTTCTCTTCTACAAAGGGGATGATATTTTAATGTCA
TCTGCAAATTGTTATTCTGAATCGGATTAGGGAAAGGACACTTTAAATCT
GTTGCTACACCCAATAGCATGCCTTTTAATACCTGGTGAATTCGTTATAA
GACGAGACTATGTATAGAACAGGTTGCTTCTTTTGCTTTGCCTTGTTTTA
ACTTCGTTTATTTTTGTTACACCCCATCCTCACAACAAATTCCGTTAAAT
ATTGCCTATTGCCAATTTCCTGATAGAACATACCTACTTTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no087_g15.g1 MSMg01no087_g15.g1 CHROMAT_FILE:
MSMg01no087_g15.g1 PHD_FILE: MSMg01no087_g15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:39:32 2005
         (420 letters)



>mm_chrY_1791802_1792621
          Length = 820

 Score =  244 bits (126), Expect = 9e-69
 Identities = 272/384 (70%), Gaps = 103/384 (26%)
 Strand = Plus / Minus

                                                                       
Query: 20  ggactgcaagcaggtcttctg-aaaaacaatgcatgatataattacctgaattttctggc 78
           ||||||||||||||||||||| |||  ||||||||||||||||||||||||||||||| |
Sbjct: 784 ggactgcaagcaggtcttctgcaaaggcaatgcatgatataattacctgaattttctgtc 725

                                                                       
Query: 79  agtgctcttcaatattgtgttctacgtgatgcaatattccactctctttctctatctctg 138
           |||||||||||||||||| ||||||||||||||||||||| |||||||            
Sbjct: 724 agtgctcttcaatattgtattctacgtgatgcaatattcctctctctt------------ 677

                                                                       
Query: 139 tctctgtctctgtccctctctgtctctgtctctctctgtctctttgtctctctctctgtc 198
                                       ||||||||||                ||||||
Sbjct: 676 ----------------------------tctctctctg----------------tctgtc 661

                                                                       
Query: 199 tctctgtatctgtctctgtctctgtctctgtctctgtctctgtctctgtctctgtctctg 258
           ||||||        ||||||||  ||||||||||  ||||||||    ||||||||||||
Sbjct: 660 tctctg--------tctgtctc--tctctgtctc--tctctgtc----tctctgtctctg 617

                                                                       
Query: 259 tctctctctctctctctctctctctctttctctctctctctctgtctgtctctctcaata 318
           ||||||||||||||                              ||||||||||||||||
Sbjct: 616 tctctctctctctc------------------------------tctgtctctctcaata 587

                                                                       
Query: 319 tctattcctctaacactcagtatgactaatgattctcttatcttctcttctacaaagggg 378
           |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 586 tctactcctctaacactcagtatgactaatgattctcttatcttctctcctacaaagggg 527

                                   
Query: 379 atgatattttaatgtcatctgcaa 402
           |||| |||| ||||||||||||||
Sbjct: 526 atgacatttgaatgtcatctgcaa 503


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 420
Length of database: 820
Length adjustment: 9
Effective length of query: 411
Effective length of database: 811
Effective search space:   333321
Effective search space used:   333321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)