BAC Information

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BAC

Clone NameMSMg01-091C03
ChromosomeY (Build37)
Map Location 1,788,073 - 1,788,581
singlet/doubletsinglet
Overlap geneVmn2r-ps137
Upstream geneUsp9y, LOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430
Downstream geneLOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236, EG631479, LOC667244, LOC100039652
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-091C03.T7 (MSMg01no091_c03.b1)MSMg01-091C03.TJ (MSMg01no091_c03.g1)
ACCAG309172AG309173
length689692
length of high quality
(start - end)		553 (46 - 598)490 (77 - 566)
definitionCHROMAT_FILE: MSMg01no091_c03.b1 PHD_FILE: MSMg01no091_c03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:44:32 2005CHROMAT_FILE: MSMg01no091_c03.g1 PHD_FILE: MSMg01no091_c03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:44:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTGTATCTTTGAAGGGTCAGAGTTTCAGACTTCATGGTTGAACAGT
TTAAATGAGACTGTGGGTCTTCCTAGAGGGATACCCTTGTTTTTAACATT
TTTTAAACTTTGTTAATTCAACAACAAGCGTCAGATGCTCCAGTCCATTA
GTTTGTTGCAAATATCTGCAGCTGAATCCTTCACCTGCTAGTTCCTAATG
AGGTACATGTCTTAAACTTGTTGTAGTGTATGTACTAGATAATGAATCAA
AATAATATCAAAAATATATTGCATATTGTAACTGAGAAATATAACGTTGG
TTCTAAGGGACCTATTCACATTCAGTTCAAGATATAGGTAATAAACAGTG
TTTCTCAATGTTTCTTAAAATGACTGTGGGTAACCTAAAGAAACAAAGCT
AAACCAAACTAAACCAAAACAAACACCCTCTTCTATACATTGTCTCATCT
TCTTCCAATTGACCAGTTCTTAAAAGCCATGCTCTTGAGTGAAACTACAC
ATTGGAAGTGCCCTTCCCCTACTCTGATTCAGAATATCACTTTACATGAG
CTCAGATATCTTATTTTGTAATCTGAGTGAATGTGTGACTTTGATATTAG
CTGATTGTTAATAGAAAGCACAAATTGTGTAGGAATGTG

CCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAGTCTGGTCTTATTTCAATGATG
TAGATCTTGGGTGTAAAGATGCATCCCAGCATCACTGCACTGGATGCCAA
GATTGAGAAGACCTCTACAGCAGCCATGACCATGCCCTTAGTCCTATGTG
AGTCATGGAGAAAGGTGACATAAACACTGCAGAATCCTAGCACGACAAAG
GTCAGGAACTTGGCTTCATTAAATGTTTCAGGAAAATTCTTTGCCACGAA
ATCCACAGTGAAGCTTCCAAGGGCAAGGCAGGTCAAGTATCCCAAAATTC
AGTAGAATGCAGTAACTGAACCCTTGTTGCACAAAATGATTATCATTATC
ATCAATATCAACAAATATCAATATCAACAAAAGGAGGAGAAACTGAGAGC
CAGATTGCCCACAGAATACATTGATATGGAACATATCAGAAGGATGTATT
TCATTGAACCTGATAAAAGGAGGTTCCTTAAACCTCTTCCAGGTTCTGTG
ATTATGAAAGCCAAACTACAATATTTGTTTTGGCAAGCAATGTGGAAACA
GACACCATGAATACAATTCCCAAAGTGATTTGTTGTAAGGCTACATTTTT
TTTTCTGTTAGGAAGACCAATGAAGAAAAAGGAGCATGAAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no091_c03.g1 MSMg01no091_c03.g1 CHROMAT_FILE:
MSMg01no091_c03.g1 PHD_FILE: MSMg01no091_c03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:44:32 2005
         (490 letters)



>mm_chrY_1788026_1788916
          Length = 891

 Score =  708 bits (366), Expect = 0.0
 Identities = 466/510 (91%), Gaps = 21/510 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagtctggtcttatttcaatgatgtagatcttgggtgtaaagatgcatcccagcatcact 60
           ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| ||
Sbjct: 556 aagtctggtcttatttcaatgatatagatcttgggtgtaaagatgcatccaagcatctct 497

                                                                       
Query: 61  gcactggatgccaagattgagaagacctctacagcagccatgaccatgcccttagtccta 120
           |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct: 496 gcactggatgccaagattgagaagacctctacagcaaccatgaccatgcccttagtgcta 437

                                                                       
Query: 121 tgtgagtcatggagaaaggtgacataaacactgcagaatcctagcacgacaaaggtcagg 180
           |||||| | ||||| ||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct: 436 tgtgagacttggaggaaggtgacatagacactgcagaatcctagcacgacaaaggtcaag 377

                                                                       
Query: 181 aacttggcttcattaaatgtttcagg-aaaattctttgccacgaaatccacagtgaagct 239
           || ||||||||||| ||||||||||| |||||| |||||||||||||||||||||| |||
Sbjct: 376 aatttggcttcattgaatgtttcaggaaaaatt-tttgccacgaaatccacagtgaggct 318

                                                                       
Query: 240 tccaagggcaaggcaggtcaagtatcccaaaattcagtagaatgcagtaactgaaccctt 299
           || |||||||||||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct: 317 tcaaagggcaaggcaggccaagtatcccgaaattcagtagaatgcagtaactgaaccctt 258

                                                                       
Query: 300 gttgcacaaaa-tgattatcattatcatcaatatcaacaaatatcaatatcaacaaa--- 355
           |||||| |||| ||||||||| |||||||||||||||||||||||||||||||||||   
Sbjct: 257 gttgcaaaaaaatgattatcaatatcatcaatatcaacaaatatcaatatcaacaaatat 198

                                                                       
Query: 356 -------------aggaggagaaactgagagccagattgcccacagaatacattgatat- 401
                        |||||||||||||||||||||||||||||| ||||||||||||||| 
Sbjct: 197 caatatcaacaaaaggaggagaaactgagagccagattgcccagagaatacattgatata 138

                                                                       
Query: 402 -ggaacatatcagaaggatgtatttcattgaacctgataaaaggaggttccttaaacctc 460
            ||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct: 137 tggaacatatcagaaggatgtatttcattgcacctgataaaaggaggttcctcaaacctc 78

                                         
Query: 461 ttccaggttctgtgattatgaaagccaaac 490
           |||| |||||||||||| ||||||||||||
Sbjct: 77  ttccgggttctgtgattttgaaagccaaac 48


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 891
Length adjustment: 10
Effective length of query: 480
Effective length of database: 881
Effective search space:   422880
Effective search space used:   422880
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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