Query= MSMg01no099_i02.b1 MSMg01no099_i02.b1 CHROMAT_FILE:
MSMg01no099_i02.b1 PHD_FILE: MSMg01no099_i02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:57:01 2005
(331 letters)
>mm_chrY_1788403_1789131
Length = 729
Score = 528 bits (273), Expect = e-154
Identities = 316/331 (95%), Gaps = 4/331 (1%)
Strand = Plus / Plus
Query: 1 atagaagtcagatatctgaacacatagctcaggaatactgtcaaatattaatttggtaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 atagaagtcagatatctgaacacatagctcaggaatactgtcaaatattaagttggtaca 260
Query: 61 tctctttaaattattgacttacactgcatttatcttgttttggaataattcacatttatt 120
| | |||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 261 tatatttaaattattgacttacactgcatttatcttgttttggaattattcacatttatt 320
Query: 121 catccagtgatgtctagaaatatttatccaccaatctaatgtacattctccataaaatct 180
|||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 321 catccagttatgtctagaaatatttatctaccaatctaatgtacattctccataaaatct 380
Query: 181 ttactcatttactttcgtt-tttcctttggaagaaataaagttctcaaatttttatttca 239
|||||||||||||||| || |||||| |||||||||||||||||||||||||||||| |
Sbjct: 381 ttactcatttactttc-ttctttcctctggaagaaataaagttctcaaatttttattaaa 439
Query: 240 atgttattcatcatttttttttcatgaagatttctgtccagctattttccaattaaattg 299
|||||||||||||||||||| ||||||||||||||||| | ||||||||||||||||||
Sbjct: 440 atgttattcatcattttttt--catgaagatttctgtcctgttattttccaattaaattg 497
Query: 300 gatttggcaattgaatctatgaccttgcata 330
|||||||||||||||||||||||||||||||
Sbjct: 498 gatttggcaattgaatctatgaccttgcata 528
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 331
Length of database: 729
Length adjustment: 9
Effective length of query: 322
Effective length of database: 720
Effective search space: 231840
Effective search space used: 231840
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no099_i02.g1 MSMg01no099_i02.g1 CHROMAT_FILE:
MSMg01no099_i02.g1 PHD_FILE: MSMg01no099_i02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:57:01 2005
(563 letters)
>mm_chrY_1310832_1311795
Length = 964
Score = 362 bits (187), Expect = e-104
Identities = 394/477 (82%), Gaps = 37/477 (7%)
Strand = Plus / Minus
Query: 110 caactcattttatagcacttacattacattaagtgcaaaagtaattcagagattatttaa 169
|||||| || ||||||| || |||| ||||||| ||||||||||| ||||||| ||||||
Sbjct: 963 caactccttgtatagcagtttcattgcattaagggcaaaagtaatccagagatcatttaa 904
Query: 170 aataaagaaggatcaggggatatggcccagag--acaatgccatgtgtgtgttcaaacat 227
||||||||| || | | ||| ||||||||| | | |||| ||| ||| || ||||
Sbjct: 903 aataaagaaagacctgtggagatggcccaggggta----gccaagtgagtgatcccacat 848
Query: 228 tcacctacaacacctgtgcttatgattttgggaggggcagagataggaagatgactgtgg 287
|||||||||||| | ||||||| || | |||||||||||||| ||||||||||||||||
Sbjct: 847 tcacctacaacaacagtgcttagga--tggggaggggcagagacaggaagatgactgtgg 790
Query: 288 cttcctgaaagcc------------agctcagcaagaaacccagtcacaagggga-taag 334
||||||||||||| |||||||||||| ||| ||||||| |||| |||
Sbjct: 789 cttcctgaaagccagccccactcctagctcagcaagagacctggtcacaa-gggagtaaa 731
Query: 335 ttatgtagga---aaagagtagatcacactatacccttccctagcctctgaacttacctg 391
||| | ||| || ||| ||| ||||| ||||||||||||||||||||||||||||||
Sbjct: 730 tta-g--ggagtgaaggagcagagcacacaatacccttccctagcctctgaacttacctg 674
Query: 392 tacagttctctatgcagactcacataaatatgattaaa--atatgcaagaggttattttg 449
||||| ||| |||||| || |||||||||||||||||| |||| |||||||||| |||
Sbjct: 673 tacaggtctgtatgcatacacacataaatatgattaaagtatat--aagaggttatgttg 616
Query: 450 catagcttatattcaaaagcaatgttgttttagactagaaacctgaggacttt-atatca 508
||||| |||||| ||||||||||||||| |||| |||| ||||||||||||| ||||||
Sbjct: 615 catagattatatgcaaaagcaatgttgtcttagcctagggacctgaggacttttatatca 556
Query: 509 ttat-agctcctggagcaaactcccaagatatagatga-tgggtatatcttcttact 563
||| || ||||||||||||||||| ||||||||| || |||||||| |||||||||
Sbjct: 555 ttaggag-tcctggagcaaactccccagatataga-gaatgggtataccttcttact 501
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 563
Length of database: 964
Length adjustment: 10
Effective length of query: 553
Effective length of database: 954
Effective search space: 527562
Effective search space used: 527562
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
