BAC Information

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BAC

Clone NameMSMg01-107L02
ChromosomeY (Build37)
Map Location 1,266,225 - 1,266,783
singlet/doubletsinglet
Overlap genenone
Upstream geneJarid1d, Eif2s3y, Tspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278, EG667079
Downstream geneLOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-107L02.T7 (MSMg01no107_l02.b1)MSMg01-107L02.TJ (MSMg01no107_l02.g1)
ACCAG321374AG321375
length1,3551,243
length of high quality
(start - end)		333 (141 - 473)588 (133 - 720)
definitionCHROMAT_FILE: MSMg01no107_l02.b1 PHD_FILE: MSMg01no107_l02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:09:55 2005CHROMAT_FILE: MSMg01no107_l02.g1 PHD_FILE: MSMg01no107_l02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:09:55 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
TTAACAGATAAAATNNNNAAACATTGCGCGCTATAGACTCATATAGGGAG
AGGATCCGCGGAATTCAGAAGAAAGAACAGCGCCCCTTAAAAGCACCAAA
GTATATTGAGTCTCAAAGACAACAGCCTTTAAGAGCTGAATATTCCAACT
ACAACAACTAGGTAACATTGGGTTCTACACTTAGCATGCCGATTTCTAGA
AAAAAAAAATTAAAGAATTAAGCAATGTTTCCTCTGAACCTGACATGTTA
CTATCACAAATGAAAGAAGGATCCATGATCACATGAATATGAAAGGGGCA
TGAAGCAGCACAATTGTTCAAATTATTGGCAGCTAGTCAGCATTAACACA
AGAAGGGACCAAAGACAATAAACAGCTTTGAAGACATGTCCAAATGACCG
CGTTCATTTACAAGTTTCTTTTTTTTTCCTTGTATATCCATTGATTGATT
AACTCATTGATTAAAGCCCTCTTTTTCCCCCCCCCCTTCAGAGTGCATAT
TGTACTACCAAAAAAAATTGGACTGTGGACCAAAGCCTTCATCTTACACC
CATGACTGACATTTCAAATTAATTTATCTACAGAATTTCTTTATTTGAAA
CAAAGTGATCAGATCCATCTATTTCTTCCAGGATATCTCTGTTTTGTTTC
CCAATTCACATTAATGCTTTCTCCCTTCTCTTACCTTGACCCCTTTATCC
AAGGCCTATTAAATCCCCAAACTGCTATACCTTATCCTATTGCCTTAATT
CTTCAATATCCCTCTTATTTTCTAATTATTTTATTATTCTATTCATCTTA
ATTCTTCATCTCCTTTTTTCTATCACATTTATCCATCTCAATCTTCCCCA
TTCATCCCAACTTCTTATACTTGTCTTAACCCCCACCTCTTCATTTTAAT
CATCCTACAATCCTCCTCATCTAACTTTGTAATTTCTCTATCAACAAACT
CATTTCTTATATATACATATATCCCTATCTCTCATTTTTCTAATTATTCT
CTTTTTCTTCCACTTCTTATCTTATTTCTTCTCATCTTCCCTATTACTTT
TCCTTTTATCTTTATTCTTTCCATAATTCTTTATATCCTTTCACTTCTTC
TCTCAATCCTATCTCTTACCTCTCTCACTATTTAAATCTCTCTACTCATC
ACTTCACTATCATCTTCTTTCTCTCATATCCCTTCTCTTCTTCTCTTATT
TTAATCACCTCAATACTCAATCTTTAAATTCTCTTCTCACTTCCTTTAAT
CATCCCATCTTTCCTCCACTATTCTCTCTTAGTCCTTTTTCTCTACTCAT
TCCTTTNATATTCCATATTTTTAATACACTCACATTCTAACTTCTCACTT
TATAT

NCAAATTCTTTNNNTACCATGTGTAGCTGGXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCCTTCAACAACCCATTGTATGA
AGTTCTCAAGGAATTAATTCCTGTAGTTCTTAATATACAATGTCTGTATA
TTAAGACAGACACATATACAGACCACTTATATTTCAATCTCCTAAATAGC
AACTCATTTTATAGCACTTACATTACATTAAGTGCAAAAGTAATCCAGAG
ATTATTTAAAATAAAGAAGGATCAGGGGATATGGCCCAGAGACAATGCCA
GGAGTGTGTTCAAACATTCACCTACAACAACAGTGCTTAAGATTTTGGGA
GGGGCAGAGACAGGAAGATGATTGTGGCTTCCTGAAAGCCAGGCTCACTA
CCAGCTCAGCAAGAAACCCAGTCACAAGGGGATAAGTTATGGAGGAAAAG
AGTAGATCACACTATACCCTTCCCTAGCCTCTGAACTTACCTGTACAGTT
CTCTATGCAGACTCACATAAATATGATTAAAATATGCAAGAGGTTATTTT
GCATAGCTTATGTTCAAAAGCAGTGTTGTTTTAGACTAGAAACCTGAGGA
CTTTATATCATTATAGTTCCTGGAGCAAACTCCCAAGATATACATGATGG
GTATATCTTCTTACTGTGCAAAGGAAACCTCAGTTAAGTGTGTGTGTCAG
TGACTCCAAACAGCTTTCCTCCTCTATGTTCCTTTATATAGCATAGAATG
ATCTGTCATTAATGAAAAATATGAAAACAAAGCTTTTTTTGAGATTTTAG
GCTTGTGTTAAAATCATATGTATCACATTGTATTAAATGGAAGTGAAAAT
CTTCAGCTCTCAGAAACAATACAGTCAATGCTGTAGGCTTCTGTTTTGTC
CCATTGTGAACAAAACTTAATTGCCCATCAACAGGTCCCATACTTTCAAC
TAATTCTGGGAAAAGGGCCTATGTTTTCCCTTCCACTAAATAATTGTCCC
TGGGATTATTCCCAGTAAAAAATCTGGCCAGCCTTAAGAAGTTCTTGGCC
TTATGTTCCACGGGATCTCCCGATTAATCCCCTTGTTATTCCCAATAACC
CCCTTACCCTTGTAAAAAATTCACCTGTACTGTAATTTTCCAAATTTCTT
TCCCAATGGTACCTTGGCACACCTTTACCAACAAATTCTTTCTTTCCCTC
TAACCATATACCTTTAATTCTGTATATAACAAAATCTCTGCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no107_l02.g1 MSMg01no107_l02.g1 CHROMAT_FILE:
MSMg01no107_l02.g1 PHD_FILE: MSMg01no107_l02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:09:55 2005
         (588 letters)



>mm_chrY_1265996_1266983
          Length = 988

 Score =  503 bits (260), Expect = e-146
 Identities = 490/574 (85%), Gaps = 30/574 (5%)
 Strand = Plus / Plus

                                                                       
Query: 30  acatatacagaccacttatatt-tcaatctcctaaatagcaactc--attttatagcact 86
           |||||||||||||||||||||| ||| ||||||||||| ||||||  ||   |||||| |
Sbjct: 230 acatatacagaccacttatattgtca-tctcctaaataacaactcctat---atagcagt 285

                                                                       
Query: 87  tacattacattaagtgcaaaagtaatccagagattatttaaaataaagaaggatcagggg 146
           | |||| ||||||| |||||||| |||||||||| |||||||||||||||||||||||  
Sbjct: 286 ttcattgcattaagggcaaaagtcatccagagatcatttaaaataaagaaggatcaggca 345

                                                                       
Query: 147 atatggcccagag--acaatgccaggagtgtgt--tcaaacattcacctacaacaacagt 202
           | ||||||||| |  | || ||||  | ||| |  ||| ||||||||||| |||||||||
Sbjct: 346 agatggcccaggggta-aa-gcca--attgtttggtcagacattcacctataacaacagt 401

                                                                       
Query: 203 gcttaagattttgggaggggcagagacaggaagatgattgtggcttcctgaaagccaggc 262
           ||| | |||   ||||||||||||||||| |||| || ||||||||||||||||| || |
Sbjct: 402 gctcaggatg--gggaggggcagagacagaaagaagactgtggcttcctgaaagcaagcc 459

                                                                       
Query: 263 tcactacc-agctcagcaagaaacccagtcacaaggggataagttatggag-gaaaagag 320
           ||||| || || |||||||||||||| |||| ||||| | || ||| |||| |||  |||
Sbjct: 460 tcact-cctaggtcagcaagaaaccctgtcataagggaacaaattagggagtgaag-gag 517

                                                                       
Query: 321 tagatcacactatacccttccctagcctctgaacttacctgtacagttctctatgcagac 380
            ||| |||||| |||| |||||| ||||||||| |||||||||||| ||| |||||| ||
Sbjct: 518 cagaacacactgtacctttccctggcctctgaatttacctgtacaggtctgtatgcacac 577

                                                                       
Query: 381 tcacataaatatgattaaaatatgcaagaggttattttgcatagcttat--gttcaaaag 438
            |||||||||||||||||| ||| |||||||||| ||||||||| ||||  ||  |||||
Sbjct: 578 acacataaatatgattaaagtatacaagaggttactttgcatagattatatgt--aaaag 635

                                                                       
Query: 439 cagtgttgttttagactagaaacctgaggacttt-atatcattatagttcctggagcaaa 497
           || ||||||||||| ||||| ||||||||||||| |||||||||  | ||||||||||||
Sbjct: 636 caatgttgttttagcctagagacctgaggacttttatatcattaggggtcctggagcaaa 695

                                                                       
Query: 498 ctcccaagatatacatga---tgggtatatcttcttactgtgcaaaggaaacctcagtta 554
           ||||| | ||||| | ||   |||||||||||||||||||||||||||||||||||||||
Sbjct: 696 ctccccatatataga-gagaatgggtatatcttcttactgtgcaaaggaaacctcagtta 754

                                             
Query: 555 agtgtgtgtgtcagtgactccaaacagctttcct 588
           ||||||||||||||||||||||||||||||||||
Sbjct: 755 agtgtgtgtgtcagtgactccaaacagctttcct 788


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 588
Length of database: 988
Length adjustment: 10
Effective length of query: 578
Effective length of database: 978
Effective search space:   565284
Effective search space used:   565284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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