BAC Information

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BAC

Clone NameMSMg01-111B10
ChromosomeY (Build37)
Map Location 1,271,800 - 1,272,373
singlet/doubletsinglet
Overlap genenone
Upstream geneJarid1d, Eif2s3y, Tspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278, EG667079
Downstream geneLOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-111B10.T7 (MSMg01no111_b10.b1)MSMg01-111B10.TJ (MSMg01no111_b10.g1)
ACCAG323847AG323848
length1,1521,138
length of high quality
(start - end)
666 (77 - 742)598 (65 - 662)
definitionCHROMAT_FILE: MSMg01no111_b10.b1 PHD_FILE: MSMg01no111_b10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:14:57 2005CHROMAT_FILE: MSMg01no111_b10.g1 PHD_FILE: MSMg01no111_b10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:14:58 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
NAAAACTATGGCGCTATAGACTCACTAAGGGAGAGGATCCGCGGAATTCC
TTAAGAAAAACAGCCATTTACATCCCAACAGGTGATTTAAATGAACAAAA
CCATACTAGACCTAAAAATGGAAGTAGACACAATAAAGAAAACCCAAAGT
GAGGCAATGCTGGAGATAGAAACCCTAGGAAAGATATCTGGAACCATAGA
TGCAAGCATCAGCAACAGAATACAAGTGATGGAAGAGAGAATGTCAGGTG
TAGAAGATTCCATAGAGAACAGCAGCACAACAATCAAAGAAAATGCAAAA
TGCAAAAGGATCCTAACTCACAACATCCAGGAAATACAGGACACAATGAG
AAGACCAAACCTACAGATAATAGGAGTTGATGAGAATGAAGATTTTCAAC
TTAAAGGGGCAGCAAATATCTTCAAAATAATTATAGAAGAAAACTTTTCA
AACCTAAAGAAAGAGATGCCCATGAACATAAAAAAAGCCTACAGAACTCC
AAATAGACTTGACCAGAAAAGAAATTCCTCCCAACACATAATAATCAGAA
AAACACATTCACTAAAAAAAGATAGAACATTATAAGCAGTAAGGGAGAAT
GGTCAAGTAACATATAAAGGCAGGACTATCAGAATTACACCAGACTTTTC
ACCAGAGACTAGGAAAGCCAGAAGAGCCTGAACAGATGTTATACAGACAC
TAAGAGAACTCAAATGCCAACCCAGGCTACTATACCTGGCCAAAATCTCA
ATAACCATAGGTGGAGAAAACGATGTATTCTATTTCTCCTTCCCTGTGTA
ATTTGTTGACAACTTTCTGAAGTATTATAACTATCTATCCTAAAATTTAA
CATTTTTTTGTTTCCTATTATTAATCAGTAGTTTGAAATACGAACTTATT
ATGGCACTACCCAATGCCAGTAGAAAATAATCATAATTATTATTTTTTAA
ACAATATTGTGGATTTATGTTTAGGAAGGCATTGAATATATTAAGACAAA
GNTTTTCTGTCCCCCTTTCTAAAATCCAGTTCCTAGGTAAAAGGTAAAAT
AACTTCCCCATGGATCCCTAAAATTAACCCCGCAAAAAATTTCACCCCCG
GGTAATATATTTAACTTTTAACCCCAAGATGGAAATATTTTTGTGACCCC
CC
NAAACGAGGCGAGGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXCCATTATAGGTCCATAGCATTTGAGACAACTGGTCC
TGTCACCCTCCTTCAGTCTTTCTCAAATTAAACCAATGGTTCTGTTGATT
CTGTCCATTGGTTGTTTGCATACATCTGCATCTCACTGTTTCACCTGCTC
ATTATTTCTTCATAAGTACAGTCATCCTAGCATTCATATTAAAAGTATCT
GAATTCAGAAACATACAGAGGCTGTGTACTGCAAGCAGGTCTTCTGCAAA
AGCAATATATAATATAAGTACTAAAATTGATATCAGTGCTCTTCAATATT
CTATTCTATGTGATGAAATCTCTCTCTCTCTTTCTCTCTCTCTCTCTCAA
TATATATATTCCTCTAACTCTTAGTATGAATAAAAATTCTCTTATATTCT
CTCCTATAATGGAGATGATATTGGCATGTCATCTGCAACATTCATTCACT
TTCCTACACAGTTTGTGCTTTCTCTTAGCAATCAACTAATATCTAAATCA
CACATGCACTCAGATTACAAAGTAAGGTATCTGAGCTCATACAAACTGTT
ATTCTGAGTCAGAGTAGGGGGAGGACAATTCCAAACTGTAGTTACGTCCA
AGAGCATGGACTCCAACAACTCGTGAATCAGTAGAAGAGACAATGTATAG
ATGCGTTTGTTTCTTTTGGTTTGGTTTGGTTTAGCTTATTGTGGTTACCC
ACAATCATTATAAGAAATACAGAGAAACACAAATTAATGCCTGTATCTTG
AACTGAATGCAAACAGGGGTCTTAGAACCAACATTATATCTCTGTTACAA
TATACAATATATATTTTTAGAGATTTTTTTTTTATTTATTAGCTATTATA
CCCCACTGCAACAAGTTAAGAAAATATTCCTAGTGACCCAAATAGCAAAC
TTTTATGATCAAATGCAAATATTTTTCACCCAATCAATGGTATTTGCAAC
ATCTGAACCCCTGGTTGTTGTAATTTATGTAGGGCCAAAAAATATTTATA
AAAAAAAGGGCTTCCCCCTGGGGATAAGAAACCCCCTGTCCTCAATTAAA
AGAGGGTTCCCCCCCAACAATTTTTCTTTATTTTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no111_b10.g1 MSMg01no111_b10.g1 CHROMAT_FILE:
MSMg01no111_b10.g1 PHD_FILE: MSMg01no111_b10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:14:58 2005
         (598 letters)



>mm_chrY_1271580_1272576
          Length = 997

 Score =  420 bits (217), Expect = e-121
 Identities = 479/593 (80%), Gaps = 59/593 (9%)
 Strand = Plus / Plus

                                                                       
Query: 43  cctccttcagtctttctcaaattaaaccaatggttctgttgattctgtccattggttgtt 102
           |||||||||||||||||| |||| |||||| | ||| |  |||||||||| ||||||| |
Sbjct: 221 cctccttcagtctttctccaattcaaccaaagtttcagcagattctgtccgttggttggt 280

                                                                       
Query: 103 tgcatacatctgcatctcactgtttcacctgctcattatttcttcataagtacagtcatc 162
           |||| |||||||||||| | |||||| |||||||||||  |||||| |||| ||||||| 
Sbjct: 281 tgcagacatctgcatctgattgtttcgcctgctcattaggtcttcagaagtgcagtcatg 340

                                                                       
Query: 163 ctagcattcatatta-aaagtatctgaattcagaaacatacagaggctgtgtactgcaag 221
           |||| ||||| |||| ||| ||| ||||||||||||| | |||||||||  |||||||| 
Sbjct: 341 ctagtattcacattacaaa-tatgtgaattcagaaacctgcagaggctgcctactgcaat 399

                                                                       
Query: 222 caggtcttctgcaaaagcaat-----atataatataagtactaaaattgatatcagtgct 276
           |||||||||||||||||||||     |||||| |||   ||| || ||  | ||||||||
Sbjct: 400 caggtcttctgcaaaagcaatacacgatataa-ata---actgaattttctgtcagtgct 455

                                                                       
Query: 277 cttcaatattctattctatgtgatga------------aatctctctctctct------- 317
           || |||     |||||||||||||||            |||||||||||||||       
Sbjct: 456 ctacaa-----tattctatgtgatgaaatctctctctcaatctctctctctctctctctc 510

                                                                       
Query: 318 --------t-tctctctctctctctcaatatatatattcctctaactcttagtatgaata 368
                   | |||||||||||||||||  |||| || || |||||| |||||||||||||
Sbjct: 511 tctctctctctctctctctctctctca--atatctactcttctaacacttagtatgaata 568

                                                                       
Query: 369 aaaattctcttatattctctcct--ataatggag-atgatattggcatgtcatctgcaac 425
           |  |||||||||| |||||| ||  |||  || | |||||||||| ||||||||||||||
Sbjct: 569 atgattctcttatcttctctgctacata--gg-gcatgatattggaatgtcatctgcaac 625

                                                                       
Query: 426 attcattcactttcctacacagtttgtgctttctcttagcaatcaactaatatctaaa-t 484
           |||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||| |
Sbjct: 626 attcattcactttcctactcagtttgtgctttctcttaggaatcaactaatatc-aaagt 684

                                                                       
Query: 485 cacacatgcactcagattacaaagtaaggtatctgagctcatacaaactgttattctgag 544
           ||||||| ||||||||||||||| |||||||||| |||||||| || |||||||||||||
Sbjct: 685 cacacattcactcagattacaaaataaggtatcttagctcatataa-ctgttattctgag 743

                                                                
Query: 545 tcagagtaggggga--ggacaattccaaactgtagttacgtccaagagcatgg 595
           | |||||  || ||  ||||| ||||||  |||||||||  ||||||| ||||
Sbjct: 744 tgagagt--ggagaaaggacacttccaatgtgtagttacacccaagagtatgg 794


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 598
Length of database: 997
Length adjustment: 10
Effective length of query: 588
Effective length of database: 987
Effective search space:   580356
Effective search space used:   580356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)