Query= MSMg01no112_h21.b1 MSMg01no112_h21.b1 CHROMAT_FILE:
MSMg01no112_h21.b1 PHD_FILE: MSMg01no112_h21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:17:39 2005
(627 letters)
>mm_chrY_1715909_1716939
Length = 1031
Score = 302 bits (156), Expect = 6e-86
Identities = 434/544 (79%), Gaps = 60/544 (11%)
Strand = Plus / Minus
Query: 8 ttccactgtactggaccatcaagtacaatgggaacagagagtaggggctg-gtcctggga 66
||||| ||||||||| ||||||| ||||| ||||||||||| ||| |||| | ||||| |
Sbjct: 545 ttcca-tgtactggaacatcaagaacaataggaacagagagaaggagctgag-cctggaa 488
Query: 67 aagaga-aaggggccaatcag-tcattttatccttcctctcaggtagcagttta-----t 119
|| ||| | ||||| |||||| || ||||||||| |||||||| |||||||||| |
Sbjct: 487 aacagagagggggctaatcagttc-ttttatcctgcctctcagatagcagtttagttttt 429
Query: 120 tttggtt-caagaaacaaatatactttctttcaatgaattttataagtgaacaggaaata 178
||| || |||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 428 ttt--ttccaagaaacaaatatactttctttcaatgaattttgttagtgaacaggaaata 371
Query: 179 tttccatctctcagaac-tgcctgtgga-aattttat--tgtggttataggagttttttt 234
||| ||||| ||||| | | | ||| | |||||||| ||| |||||| || ||||||
Sbjct: 370 ttttcatctatcaga-cataacagtg-acaattttatattgt--ttatagaagatttttt 315
Query: 235 gggtctattttccgaagaacaattaaagccaggtatgtt-taaacatacctgtattagca 293
||| ||||||| ||||||||| ||||||||||||||| | || ||| | ||| ||| |
Sbjct: 314 gggactattttattaagaacaatgaaagccaggtatgttgtcaa-atatcggtaatagaa 256
Query: 294 ccaacacggaatgctgaaccgcaacactctatcac-ttcctagagaatacataacat--- 349
|| ||| ||||||||||||| ||||| |||| || ||||| ||||||| |||||
Sbjct: 255 cctacatggaatgctgaacctcaacattctag-acgttcctggagaata---aacatcac 200
Query: 350 actaagtgcctacc-----tcaacactaaaatgaagtgaaataaaatcaaacaaatgtac 404
||||||| | |||| || |||||||| |||||||||| | ||| |||
Sbjct: 199 actaagt----a--aaaattcaa-ac-aaaatgaa-----ataaaatcaatccaatttac 153
Query: 405 cttcgataattgtatctagtgca-ttgggaagtttataagataatgaatcaa-aaa---a 459
|||||||| |||||||| || || || |||| | |||||||||| || ||| ||| |
Sbjct: 152 cttcgatatttgtatctcgt-caatttggaaactaataagataataaaccaagaaataaa 94
Query: 460 tt-caattatctttatga-taaaaataattagaaatgttatgaaggtt--aaacaattac 515
|| ||||||||||||||| ||||||||||||||||||||| |||| || ||||||| ||
Sbjct: 93 tttcaattatctttatgaataaaaataattagaaatgttaagaagttttaaaacaatcac 34
Query: 516 taca 519
||||
Sbjct: 33 taca 30
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 627
Length of database: 1031
Length adjustment: 10
Effective length of query: 617
Effective length of database: 1021
Effective search space: 629957
Effective search space used: 629957
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no112_h21.g1 MSMg01no112_h21.g1 CHROMAT_FILE:
MSMg01no112_h21.g1 PHD_FILE: MSMg01no112_h21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:17:40 2005
(604 letters)
>mm_chrY_1265963_1266969
Length = 1007
Score = 543 bits (281), Expect = e-158
Identities = 533/629 (84%), Gaps = 37/629 (5%)
Strand = Plus / Plus
Query: 1 catcaaaa-aaattgtatgaagttctcaaggaattaattaatgtagttcttaatatacaa 59
|||||||| | |||||||||| |||||||||||||||| || |||||||||||||||| |
Sbjct: 191 catcaaaatatattgtatgaaattctcaaggaattaatgaaagtagttcttaatatacca 250
Query: 60 tgtctttactgaacatatacagaccacttatatt-tcaatctcctaaatagcaactc--a 116
||||| |||||||||||||||||||||||||||| ||| ||||||||||| |||||| |
Sbjct: 251 tgtctgtactgaacatatacagaccacttatattgtca-tctcctaaataacaactccta 309
Query: 117 ttttatagcacttacattacattaagtgcaaaagtaatccagagattatttaaaataaag 176
| |||||| || |||| ||||||| |||||||| |||||||||| |||||||||||||
Sbjct: 310 t---atagcagtttcattgcattaagggcaaaagtcatccagagatcatttaaaataaag 366
Query: 177 aaggatcaggggatatggcccagag--acaatgcca-tgtgtgtgttcaaacattcacct 233
|||||||||| | ||||||||| | | || |||| | ||| || ||| ||||||||||
Sbjct: 367 aaggatcaggcaagatggcccaggggta-aa-gccaat-tgtttggtcagacattcacct 423
Query: 234 acaacaccagtgcttatgattttgggaggggcagagataggaagatgactgtggcttcct 293
| |||| ||||||| | ||| |||||||||||||| || |||| ||||||||||||||
Sbjct: 424 ataacaacagtgctcaggatg--gggaggggcagagacagaaagaagactgtggcttcct 481
Query: 294 gaaagccagc------------tcagcaagaaacccagtcacaaggggataagttatgta 341
|||||| ||| |||||||||||||| |||| ||||| | || ||| | |
Sbjct: 482 gaaagcaagcctcactcctaggtcagcaagaaaccctgtcataagggaacaaattaggga 541
Query: 342 g-gaaaagagtagatcacactatacccttccctagcctctgaacttacctgtacagttct 400
| ||| ||| ||| |||||| |||| |||||| ||||||||| |||||||||||| |||
Sbjct: 542 gtgaag-gagcagaacacactgtacctttccctggcctctgaatttacctgtacaggtct 600
Query: 401 ctatgcagactcacataaatatgattaaaatatgcaagaggttattttgcatagcttata 460
|||||| || |||||||||||||||||| ||| |||||||||| ||||||||| |||||
Sbjct: 601 gtatgcacacacacataaatatgattaaagtatacaagaggttactttgcatagattata 660
Query: 461 t-tcaaaagcaatgttgttttagactagaaacctgaggacttt-atatcattatagcttc 518
| | ||||||||||||||||||| ||||| ||||||||||||| ||||||||| | | |
Sbjct: 661 tgt-aaaagcaatgttgttttagcctagagacctgaggacttttatatcattaggggtcc 719
Query: 519 tggagcaaactcccaagatatagatga---tgggtatatcttcttactgtgcaaaggaaa 575
|||||||||||||| | ||||||| || ||||||||||||||||||||||||||||||
Sbjct: 720 tggagcaaactccccatatataga-gagaatgggtatatcttcttactgtgcaaaggaaa 778
Query: 576 cctcagttaagtgtgtgtgtcagtgactc 604
|||||||||||||||||||||||||||||
Sbjct: 779 cctcagttaagtgtgtgtgtcagtgactc 807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 1007
Length adjustment: 10
Effective length of query: 594
Effective length of database: 997
Effective search space: 592218
Effective search space used: 592218
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
