Query= MSMg01no113_l02.b1 MSMg01no113_l02.b1 CHROMAT_FILE:
MSMg01no113_l02.b1 PHD_FILE: MSMg01no113_l02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:19:12 2005
(599 letters)
>mm_chrY_426309_427307
Length = 999
Score = 799 bits (413), Expect = 0.0
Identities = 422/425 (99%), Gaps = 2/425 (0%)
Strand = Plus / Minus
Query: 176 atttcttttctttctttcttttctctctcttttttttttcttctttttctctcttttggt 235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 999 atttcttttctttctttcttttctctctcttttttttttcttctttttctctcttttggt 940
Query: 236 tttttgagacagggtttctctgtatagccctggctgtcctgaaactcactctgtagacca 295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 939 tttttgagacagggtttctctgtatagccctggctgtcctgaaactcactctgtagacca 880
Query: 296 ggctgacctcaaactcagaaatccacctgcctctgcctcccaagtgctgggattaaaggc 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 879 ggctgacctcaaactcagaaatccacctgcctctgcctcccaagtgctgggattaaaggc 820
Query: 356 acgcgccatcactgcccggcgtctaagtgcatttttaagggagcttaagctatgaagtat 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 819 acgcgccatcactgcccggcgtctaagtgcatttttaagggagcttaagctatgaagtat 760
Query: 416 tggcaggactcacttggggaacagaatgactcacatcctacaattctctcacattcacaa 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 759 tggcaggactcacttggggaacagaatgactcacatcctacaattctctcacattcacaa 700
Query: 476 tatctctatatgtgtacaggtcttgtttttttg-tcaattgtaacaaagtattccctcct 534
||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 699 tatctctatatgtgtacaggtcttgtttttttgat-aattgtaacaaagtattccctcct 641
Query: 535 tatttttgatggcttttccttcagcagggaataaccatctatgtctcttccagttttaaa 594
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 640 tatttttgatggcttttccttcagcagtgaataaccatctatgtctcttccagttttaaa 581
Query: 595 gcctg 599
|||||
Sbjct: 580 gcctg 576
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 599
Length of database: 999
Length adjustment: 10
Effective length of query: 589
Effective length of database: 989
Effective search space: 582521
Effective search space used: 582521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no113_l02.g1 MSMg01no113_l02.g1 CHROMAT_FILE:
MSMg01no113_l02.g1 PHD_FILE: MSMg01no113_l02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:19:12 2005
(615 letters)
>mm_chrY_264866_265880
Length = 1015
Score = 1181 bits (611), Expect = 0.0
Identities = 614/615 (99%)
Strand = Plus / Plus
Query: 1 aaagcttacatagacttctcattttaagagggagcatctctgggctagagagatgaatca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaagcttacatagacttctcattttaagagggagcatctctgggctagagagatgaatca 260
Query: 61 tctttaagagggcttcctagcttgttagaggtctagttcccagtaaataaatggcttata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctttaagagggcttcctagcttgttagaggtctagttcccagtaaataaatggcttata 320
Query: 121 actgcttatatctccagcttcagaagataggacacactatctggaccacagacatacaca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 actgcttatatctccagcttcagaagataggacacactatctggaccacagacatacaca 380
Query: 181 tggcatattctgttgctctaattcccatacaagtttttaaaataagatgcccaatattgg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tggcatattctgttgctctaattcccatacaagtttttaaaataagatgcccaatattgg 440
Query: 241 gcaaatacaatgaggattaggacataatggaacaaagtgcagtatgaactaggaattact 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcaaatacaatgaggattaggacataatggaacaaagtgcagtatgaactaggaattact 500
Query: 301 gtagtgggtattttcaaatatattttaaaacattactgtgcatggctgtgaagacaatat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtagtgggtattttcaaatatattttaaaacattactgtgcatggctgtgaagacaatat 560
Query: 361 atgccctacatgttagcaaatcttacagaattgttaagatcagaattacttgtgtaagtg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atgccctacatgttagcaaatcttacagaattgttaagatcagaattacttgtgtaagtg 620
Query: 421 ggtttttttactaaccataatatcattcaggagaaacacacctaccccatcacataccct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggtttttttactaaccataatatcattcaggagaaacacacctaccccatcacataccct 680
Query: 481 tagtggagaagaagataatttgaatcccaggcataatcaaattaggatggtgcttagctt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tagtggagaagaagataatttgaatcccaggcataatcaaattaggatggtgcttagctt 740
Query: 541 taaaaattttttattaagatatggttatatcatggaggtaccctttccaagaccctactg 600
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 taaaaattttttattaagatatggttatatcatggaggtaccctttccaagaccctactc 800
Query: 601 ctactccttttcaaa 615
|||||||||||||||
Sbjct: 801 ctactccttttcaaa 815
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 615
Length of database: 1015
Length adjustment: 10
Effective length of query: 605
Effective length of database: 1005
Effective search space: 608025
Effective search space used: 608025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|