BAC Information

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BAC

Clone NameMSMg01-113L02
ChromosomeY (Build37)
Map Location 265,066 - 427,307
singlet/doubletdoublet
Overlap geneJarid1d, Eif2s3y, Tspy-ps
Upstream geneLOC100039202, Zfy1, Ube1y1, Rhoay-ps3
Downstream geneUty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-113L02.T7 (MSMg01no113_l02.b1)MSMg01-113L02.TJ (MSMg01no113_l02.g1)
ACCAG325764AG325765
length689695
length of high quality
(start - end)
599 (41 - 639)615 (76 - 690)
definitionCHROMAT_FILE: MSMg01no113_l02.b1 PHD_FILE: MSMg01no113_l02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:19:12 2005CHROMAT_FILE: MSMg01no113_l02.g1 PHD_FILE: MSMg01no113_l02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:19:12 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(426,884 - 427,307)(265,066 - 265,680)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAATAGGATCCGCGGAAT
TCACTTTGTACACCAGGCTGGCCTTGAACTCAGAAATTCACCTGCCTCTG
CCTCCCAGAGTGCTGGGATTAAAGGTGTGAGCCACCATGCCCTGCTTTTC
CTGGAATTCTTTTAGGGCTTTTTTCTGCTTTAAGGGCTTCTACTTGTTTA
CCTGTGTTCTCCTGTATTTCTTTTCTTTCTTTCTTTTCTCTCTCTTTTTT
TTTTCTTCTTTTTCTCTCTTTTGGTTTTTTGAGACAGGGTTTCTCTGTAT
AGCCCTGGCTGTCCTGAAACTCACTCTGTAGACCAGGCTGACCTCAAACT
CAGAAATCCACCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCACGCG
CCATCACTGCCCGGCGTCTAAGTGCATTTTTAAGGGAGCTTAAGCTATGA
AGTATTGGCAGGACTCACTTGGGGAACAGAATGACTCACATCCTACAATT
CTCTCACATTCACAATATCTCTATATGTGTACAGGTCTTGTTTTTTTGTC
AATTGTAACAAAGTATTCCCTCCTTATTTTTGATGGCTTTTCCTTCAGCA
GGGAATAACCATCTATGTCTCTTCCAGTTTTAAAGCCTGTGTTAGATCCT
TTAGTTCAGCTTTGTGGGCTGAAGTTCCTGGCAACAAAG
CATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAAAGCTTACATAGACTTCTCATTTT
AAGAGGGAGCATCTCTGGGCTAGAGAGATGAATCATCTTTAAGAGGGCTT
CCTAGCTTGTTAGAGGTCTAGTTCCCAGTAAATAAATGGCTTATAACTGC
TTATATCTCCAGCTTCAGAAGATAGGACACACTATCTGGACCACAGACAT
ACACATGGCATATTCTGTTGCTCTAATTCCCATACAAGTTTTTAAAATAA
GATGCCCAATATTGGGCAAATACAATGAGGATTAGGACATAATGGAACAA
AGTGCAGTATGAACTAGGAATTACTGTAGTGGGTATTTTCAAATATATTT
TAAAACATTACTGTGCATGGCTGTGAAGACAATATATGCCCTACATGTTA
GCAAATCTTACAGAATTGTTAAGATCAGAATTACTTGTGTAAGTGGGTTT
TTTTACTAACCATAATATCATTCAGGAGAAACACACCTACCCCATCACAT
ACCCTTAGTGGAGAAGAAGATAATTTGAATCCCAGGCATAATCAAATTAG
GATGGTGCTTAGCTTTAAAAATTTTTTATTAAGATATGGTTATATCATGG
AGGTACCCTTTCCAAGACCCTACTGCTACTCCTTTTCAAATTCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no113_l02.b1 MSMg01no113_l02.b1 CHROMAT_FILE:
MSMg01no113_l02.b1 PHD_FILE: MSMg01no113_l02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:19:12 2005
         (599 letters)



>mm_chrY_426309_427307
          Length = 999

 Score =  799 bits (413), Expect = 0.0
 Identities = 422/425 (99%), Gaps = 2/425 (0%)
 Strand = Plus / Minus

                                                                       
Query: 176 atttcttttctttctttcttttctctctcttttttttttcttctttttctctcttttggt 235
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 999 atttcttttctttctttcttttctctctcttttttttttcttctttttctctcttttggt 940

                                                                       
Query: 236 tttttgagacagggtttctctgtatagccctggctgtcctgaaactcactctgtagacca 295
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 939 tttttgagacagggtttctctgtatagccctggctgtcctgaaactcactctgtagacca 880

                                                                       
Query: 296 ggctgacctcaaactcagaaatccacctgcctctgcctcccaagtgctgggattaaaggc 355
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 879 ggctgacctcaaactcagaaatccacctgcctctgcctcccaagtgctgggattaaaggc 820

                                                                       
Query: 356 acgcgccatcactgcccggcgtctaagtgcatttttaagggagcttaagctatgaagtat 415
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 819 acgcgccatcactgcccggcgtctaagtgcatttttaagggagcttaagctatgaagtat 760

                                                                       
Query: 416 tggcaggactcacttggggaacagaatgactcacatcctacaattctctcacattcacaa 475
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 759 tggcaggactcacttggggaacagaatgactcacatcctacaattctctcacattcacaa 700

                                                                       
Query: 476 tatctctatatgtgtacaggtcttgtttttttg-tcaattgtaacaaagtattccctcct 534
           ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 699 tatctctatatgtgtacaggtcttgtttttttgat-aattgtaacaaagtattccctcct 641

                                                                       
Query: 535 tatttttgatggcttttccttcagcagggaataaccatctatgtctcttccagttttaaa 594
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 640 tatttttgatggcttttccttcagcagtgaataaccatctatgtctcttccagttttaaa 581

                
Query: 595 gcctg 599
           |||||
Sbjct: 580 gcctg 576


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 599
Length of database: 999
Length adjustment: 10
Effective length of query: 589
Effective length of database: 989
Effective search space:   582521
Effective search space used:   582521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no113_l02.g1 MSMg01no113_l02.g1 CHROMAT_FILE:
MSMg01no113_l02.g1 PHD_FILE: MSMg01no113_l02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:19:12 2005
         (615 letters)



>mm_chrY_264866_265880
          Length = 1015

 Score = 1181 bits (611), Expect = 0.0
 Identities = 614/615 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaagcttacatagacttctcattttaagagggagcatctctgggctagagagatgaatca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaagcttacatagacttctcattttaagagggagcatctctgggctagagagatgaatca 260

                                                                       
Query: 61  tctttaagagggcttcctagcttgttagaggtctagttcccagtaaataaatggcttata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctttaagagggcttcctagcttgttagaggtctagttcccagtaaataaatggcttata 320

                                                                       
Query: 121 actgcttatatctccagcttcagaagataggacacactatctggaccacagacatacaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 actgcttatatctccagcttcagaagataggacacactatctggaccacagacatacaca 380

                                                                       
Query: 181 tggcatattctgttgctctaattcccatacaagtttttaaaataagatgcccaatattgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tggcatattctgttgctctaattcccatacaagtttttaaaataagatgcccaatattgg 440

                                                                       
Query: 241 gcaaatacaatgaggattaggacataatggaacaaagtgcagtatgaactaggaattact 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcaaatacaatgaggattaggacataatggaacaaagtgcagtatgaactaggaattact 500

                                                                       
Query: 301 gtagtgggtattttcaaatatattttaaaacattactgtgcatggctgtgaagacaatat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtagtgggtattttcaaatatattttaaaacattactgtgcatggctgtgaagacaatat 560

                                                                       
Query: 361 atgccctacatgttagcaaatcttacagaattgttaagatcagaattacttgtgtaagtg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atgccctacatgttagcaaatcttacagaattgttaagatcagaattacttgtgtaagtg 620

                                                                       
Query: 421 ggtttttttactaaccataatatcattcaggagaaacacacctaccccatcacataccct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggtttttttactaaccataatatcattcaggagaaacacacctaccccatcacataccct 680

                                                                       
Query: 481 tagtggagaagaagataatttgaatcccaggcataatcaaattaggatggtgcttagctt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tagtggagaagaagataatttgaatcccaggcataatcaaattaggatggtgcttagctt 740

                                                                       
Query: 541 taaaaattttttattaagatatggttatatcatggaggtaccctttccaagaccctactg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 741 taaaaattttttattaagatatggttatatcatggaggtaccctttccaagaccctactc 800

                          
Query: 601 ctactccttttcaaa 615
           |||||||||||||||
Sbjct: 801 ctactccttttcaaa 815


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 615
Length of database: 1015
Length adjustment: 10
Effective length of query: 605
Effective length of database: 1005
Effective search space:   608025
Effective search space used:   608025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)