Query= MSMg01no116_h20.b1 MSMg01no116_h20.b1 CHROMAT_FILE:
MSMg01no116_h20.b1 PHD_FILE: MSMg01no116_h20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:22:45 2005
(511 letters)
>mm_chrY_2566493_2567407
Length = 915
Score = 339 bits (175), Expect = 4e-97
Identities = 427/529 (80%), Gaps = 47/529 (8%)
Strand = Plus / Minus
Query: 1 tttagatttttcct-gctgctaagaccactagtgttctctggtacattcaaccttactga 59
||||| |||||||| |||||||||||| | |||| ||||| |||||||| |||||||||
Sbjct: 722 tttag-tttttcctggctgctaagaccccaagtgatctctagtacattcggccttactga 664
Query: 60 tctccaggcgactagacttgtcaggatcagagtggaaactggatattttacaaccaatt- 118
|||||| || |||||| ||| || ||||||||||||||||||||||||| ||| ||
Sbjct: 663 tctccaagcaactagatttggcaaaatcagagtggaaactggatattttatggccagttc 604
Query: 119 atctggtccacttgcctacctctggttatcccagtttctccacctaaattcgttactgat 178
| ||| | ||||||| ||||| ||| |||||||||||||||||||| ||||||||
Sbjct: 603 a-ctgatacacttgc------ctggtcatctcagtttctccacctaaattctttactgat 551
Query: 179 aatttcctcagtatgcagcc--tgccatgattcacagacagg---tacaacaactgcttc 233
|||||| || | |||||||| | ||||||||||||| || | ||||||| |||||
Sbjct: 550 aatttcttcggcatgcagcctatcccatgattcacaggcaagccctacaaca---gcttc 494
Query: 234 tg--gctcagtattaaattcaagtcctttctcttcttcagga---atgttaatatttgac 288
|| ||| ||| |||||| || ||| ||||||| ||||||| | |||| |||| |
Sbjct: 493 tgctgct--gtactaaatttaaatccattctctttttcaggactta--ttaacatttcaa 438
Query: 289 gatatacaaatttatttatctgaggtagaatgggctatgct-aacccatggaagaagaca 347
|||||||||| |||| ||||||| ||| |||||||| || ||||| | ||||||||
Sbjct: 437 aatatacaaatgcatttctctgaggaagattgggctatactgaacccttcccagaagaca 378
Query: 348 ctctacagtgttgtaatgctggccatctacaagctaaccacctgactagtttaactggtt 407
|||||||||||||||||||||| ||||||||||||||| || || |||| | |
Sbjct: 377 ctctacagtgttgtaatgctggacatctacaagctaactacatgtctag----a-----t 327
Query: 408 aacta--taactcctttcctttgtgtatacattgtgtaacctggactg---taacagtga 462
|| | ||||||||||||||||||||||||||||||||||||||||| | || |||
Sbjct: 326 aa--aagtaactcctttcctttgtgtatacattgtgtaacctggactgtgct--ca-tga 272
Query: 463 aaaatatactctgggagatattgccttttggattataattgatttagat 511
||||||||| |||||||| ||| ||| |||| |||||||||||||||||
Sbjct: 271 aaaatataccctgggagaaattccctgttgggttataattgatttagat 223
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 511
Length of database: 915
Length adjustment: 10
Effective length of query: 501
Effective length of database: 905
Effective search space: 453405
Effective search space used: 453405
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no116_h20.g1 MSMg01no116_h20.g1 CHROMAT_FILE:
MSMg01no116_h20.g1 PHD_FILE: MSMg01no116_h20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:22:46 2005
(428 letters)
>mm_chrY_1655671_1656499
Length = 829
Score = 335 bits (173), Expect = 4e-96
Identities = 367/435 (84%), Gaps = 23/435 (5%)
Strand = Plus / Minus
Query: 1 aaacaattttggaccctatgaaagtaatggattgtccaaatgctcccggactgagaatct 60
|||||| ||||||||||||||||||||| ||||| ||||||||||| |||||||||||||
Sbjct: 624 aaacaagtttggaccctatgaaagtaatagattgcccaaatgctcctggactgagaatct 565
Query: 61 tagggaagct-ctaggttttttcttaatctgcgagggcatttagacattagagcaagcag 119
| ||||| || ||||| |||||||||||||| | |||||||||| ||| ||||||| |
Sbjct: 564 tggggaa-ctgctagggattttcttaatctgcaatggcatttagatattggagcaagtgg 506
Query: 120 agatgatttgctcctcctcttaggcaatcaga---atc-tgaaagacaaccgttgtgagc 175
||||| ||||||||| || ||||||| ||||| || || ||||||| | ||||||||
Sbjct: 505 agatgctttgctccttcttttaggcactcagatttgtcttggaagacaaactttgtgagc 446
Query: 176 -cttgagagggtttgctggaggagaagggatattgacagtgctctacccaacctgcaagg 234
|||||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||
Sbjct: 445 atttgagagggtttgctggaggagaagggatattgacagtgctctaaccaaactgcatgg 386
Query: 235 cacacagctagaccttgttccctctgat-gcatagaagtgtctgatggtattag-atggg 292
||||||||||||| |||||||||||| | |||||||| | ||||||||| || | |||
Sbjct: 385 cacacagctagactttgttccctctg-tagcatagaattttctgatggtgtt-gcatg-- 330
Query: 293 attcttgatgaggacagaatctgaggaaaggttcctg-tagagaaa-tgaagtgcagtta 350
|| |||| ||||||||| |||||||| ||| |||| | |||| ||| || ||||||||||
Sbjct: 329 atccttgctgaggacaggatctgaggcaagtttccaggtaga-aaactgtagtgcagtta 271
Query: 351 tacaacctag-aaagtatataccattgatcattgtgagcctgaaacagaaagcacccaag 409
||||| ||| ||| |||| |||||| ||| ||||||||||| | || ||||| | |
Sbjct: 270 tacaaggtagcaaa-tataaaccattaatc---gtgagcctgaagctgagagcactga-g 216
Query: 410 -cattggacctaatg 423
||||||||||||||
Sbjct: 215 acattggacctaatg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 428
Length of database: 829
Length adjustment: 9
Effective length of query: 419
Effective length of database: 820
Effective search space: 343580
Effective search space used: 343580
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
