Query= MSMg01no117_d10.b1 MSMg01no117_d10.b1 CHROMAT_FILE:
MSMg01no117_d10.b1 PHD_FILE: MSMg01no117_d10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:23:41 2005
(622 letters)
>mm_chrY_1266256_1267282
Length = 1027
Score = 530 bits (274), Expect = e-154
Identities = 518/610 (84%), Gaps = 37/610 (6%)
Strand = Plus / Minus
Query: 26 catgacacttggtagtatagtttatatcattacttttcatttctcacagtttagggttat 85
|||| ||||| |||||||| |||||||||||||||||||||||||| || ||||||||||
Sbjct: 948 catgccacttagtagtatattttatatcattacttttcatttctcagaggttagggttat 889
Query: 86 ttgcataacata-tttctgatcagccatcattctcaaataatccaaaggcatcctaaccc 144
||||||| || | ||||||||| ||||||| ||||| |||| |||||||| |||||||||
Sbjct: 888 ttgcatagca-agtttctgatcggccatcactctcacataagccaaaggcttcctaaccc 830
Query: 145 caccccacacccacacacacatttctacttgattaaccatattggcattacttattt-t- 202
||| ||||||||||||||||||| || |||||||||| |||||| |
Sbjct: 829 cac--------------cacatttctacttgattaatcacattggcattagttatttgta 784
Query: 203 catggaaacatatccctt-attcctgatttagttcaaatcgtgag-aaatgttg--atgt 258
|| ||||||||| |||| | ||||||||||||||||| | || | || ||||| |||
Sbjct: 783 ca--gaaacatattccttca-tcctgatttagttcaaagcatg-gtaactgttgaaatg- 729
Query: 259 ataattaattcctattcataatgggataaaacagaagtcaacaggattgaatccattgtt 318
|||||||||||||| | |||||||||||||||||| ||||| ||||| |||||||||
Sbjct: 728 -caattaattcctatttaaaatgggataaaacagaagccaacacaattgactccattgtt 670
Query: 319 ccttggagcagaagatttcccatcgatttagtaaaatattataaatatgattttaaaaga 378
||| || || ||||||||||| || ||||| ||||| |||||||||||||||||| | |
Sbjct: 669 cctgggtgctgaagatttcccttccatttaataaaacgttataaatatgattttaacaca 610
Query: 379 aggc-aaca-ccctgaaaaag-tattattttcatattttcattatttacagaccattctg 435
|| | || | ||||||||||| | || |||||||| |||||||||||||||| |||||||
Sbjct: 609 agcctaa-agccctgaaaaagct-ttgttttcatagtttcattatttacagatcattctg 552
Query: 436 tggtataaataggaatctagaggaagaaaggtgtttaaagtcactgacacacacacttaa 495
|| ||||||||||||| ||||||| ||||| ||||| ||||||||||||||||||||||
Sbjct: 551 tgctataaataggaatttagaggaggaaagctgtttggagtcactgacacacacacttaa 492
Query: 496 ctgaggtttccttagcacaggaagaagatatatcaat-c-ctctatatctggagagttt- 552
||||||||||||| |||||| ||||||||||| | || | |||||||| ||| ||||||
Sbjct: 491 ctgaggtttcctttgcacagtaagaagatatacccattctctctatatatggggagtttg 432
Query: 553 ctccagg-cccctaatgatataaaagtcttcaggtctctaggttaaaacaacattgcttt 611
||||||| |||||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct: 431 ctccaggacccctaatgatataaaagtcctcaggtctctaggctaaaacaacattgcttt 372
Query: 612 tgcctataat 621
| | ||||||
Sbjct: 371 tacatataat 362
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 622
Length of database: 1027
Length adjustment: 10
Effective length of query: 612
Effective length of database: 1017
Effective search space: 622404
Effective search space used: 622404
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no117_d10.g1 MSMg01no117_d10.g1 CHROMAT_FILE:
MSMg01no117_d10.g1 PHD_FILE: MSMg01no117_d10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:23:41 2005
(228 letters)
>mm_chrY_1591452_1592079
Length = 628
Score = 238 bits (123), Expect = 2e-67
Identities = 195/221 (88%), Gaps = 8/221 (3%)
Strand = Plus / Minus
Query: 14 gtacagtagtgctcttgacaacatg-gtca----tctattcccattaagatatcttttta 68
||||| |||||||||| || || || |||| |||| | |||| ||||||| ||| ||
Sbjct: 468 gtacaatagtgctctttaccac-tgagtcatctctctagtaccataaagatatatttgta 410
Query: 69 agaaatccaatattaacatgcagaaaagagaccagg-tagaagttaagaaagattaaatt 127
|||||||||||||| ||||||||||||||||||||| | |||| |||||| ||| |||||
Sbjct: 409 agaaatccaatattcacatgcagaaaagagaccaggat-gaaggtaagaatgatcaaatt 351
Query: 128 gatggtgacctttaaaaacaataaaggacacacaaaggactagaggacactgagggacaa 187
||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct: 350 gatggtgacctttaaaaggaataaaggacacacaaaggagtagaggacactgagggacaa 291
Query: 188 atgaattctaagatgaagttctcaaaatgtgaagcaggaga 228
||||||||||||||| ||||||||||| ||||| |||||||
Sbjct: 290 atgaattctaagatggagttctcaaaaagtgaaccaggaga 250
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 228
Length of database: 628
Length adjustment: 9
Effective length of query: 219
Effective length of database: 619
Effective search space: 135561
Effective search space used: 135561
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
