BAC Information

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BAC

Clone NameMSMg01-119D11
ChromosomeY (Build37)
Map Location 1,921,608 - 1,922,169
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry
Downstream geneLOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236, EG631479, LOC667244, LOC100039652
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-119D11.T7 (MSMg01no119_d11.b1)MSMg01-119D11.TJ (MSMg01no119_d11.g1)
ACCAG329892AG329893
length713716
length of high quality
(start - end)
565 (45 - 609)564 (71 - 634)
definitionCHROMAT_FILE: MSMg01no119_d11.b1 PHD_FILE: MSMg01no119_d11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:26:18 2005CHROMAT_FILE: MSMg01no119_d11.g1 PHD_FILE: MSMg01no119_d11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:26:18 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAGAATCCGCGGAA
TTCAATGGAATTCCCAGCTGGCACTACTGGACTTCTAAGTGGTTAGTTTT
TCTTTTAAGGGTATGTTTCAGCACCATTTCAATGCCAACAATCAATAAGA
CTTTATAAGCCTTTGGATAGATTTCTAACACAAATGAATACAAATATATC
CATCCCAATGGGTGCTTATGTCTCTTTCTCTGGAGAGTTTCTGCTATTGT
TTCTCCATGTCATTTGTGGATTTTATTCTCCTCTGTGTGAATTGTATGCA
GAGAGCCATAGATACAGGACAATGACCTCATTGATCCTTTGGCATTCCAC
AGGCTTCCTCTTTTTCACCTGTACCTACTTGCTACATATCTTCCTCTGTC
TCCTCCTCCTCCTCCTCCTCTTTCTTCCTCCTCTTTCTTTCTCCTCTTCT
TCCTCCTCCTCCTCCTCCTCCTCTTTCTTCTTCCTCCTCCTCTCTCTCCT
TCATCTTTGTGCACAGAGTATCCTTGTGCAAGAGAGCTTTCGAGTTAATT
CTGGCTTGAATTTTGCAAGCAGTGTTCTGCCTAAGATTTATATACCTTTA
GCATTCTCCAGAATGTTCACTCGACTATCTGCTTATAGGTGAGTGCTGGG
ATTGGCGGCTATTCTTGGAGAGTTCATGAGATGTCGTTCTTTTGTTAGAT
GCCATCCCCCTAA
ATGCAGTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAAA
CACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAA
AACAACTCTGAGATTCCACTTCACTCCACTTAGAATGGCTAAGATCAAAA
ACTCAGGTGACAGCAGATGCTGGGGAGGATGTGGAGAAAGGGGAACACTC
CTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCAGT
CTGGCGGTTCCTCAGAAAATTGGACAAAGTACTACTGGAGGATCCAGTAA
TACCTCTCCTGGGCATATATCCAGAAGATATCCCAACCGGTAGGAAGGAC
GCATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTG
GAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGT
ACATTTACACAATGGAATACTACTCAGCTATTAAAAAAAGTGAATTTATG
AAATTCCTAGGCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGT
AACCCAATCACAAAGGAACTCACACAGTATGTACTCACTGATAAGTGGAT
ATTAGCCCAGAAACTTATGATACCCCAGATATAAGATACAACTTGCCAAA
CGCATGAAATTCAAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no119_d11.b1 MSMg01no119_d11.b1 CHROMAT_FILE:
MSMg01no119_d11.b1 PHD_FILE: MSMg01no119_d11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:26:18 2005
         (565 letters)



>mm_chrY_1921405_1922369
          Length = 965

 Score = 1054 bits (545), Expect = 0.0
 Identities = 558/565 (98%), Gaps = 6/565 (1%)
 Strand = Plus / Plus

                                                                       
Query: 4   gaattcaatggaa---ttcccagctggcactactggacttctaagtggttagtttttctt 60
           |||||||||||||   ||   |||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattcaatggaacagtt---agctggcactactggacttctaagtggttagtttttctt 260

                                                                       
Query: 61  ttaagggtatgtttcagcaccatttcaatgccaacaatcaataagactttataagccttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttaagggtatgtttcagcaccatttcaatgccaacaatcaataagactttataagccttt 320

                                                                       
Query: 121 ggatagatttctaacacaaatgaatacaaatatatccatcccaatgggtgcttatgtctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggatagatttctaacacaaatgaatacaaatatatccatcccaatgggtgcttatgtctc 380

                                                                       
Query: 181 tttctctggagagtttctgctattgtttctccatgtcatttgtggattttattctcctct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttctctggagagtttctgctattgtttctccatgtcatttgtggattttattctcctct 440

                                                                       
Query: 241 gtgtgaattgtatgcagagagccatagatacaggacaatgacctcattgatcctttggca 300
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 441 gtgtgaattgtatgcagagagccatagatacaggacaaggacctcattgatcctttggca 500

                                                                       
Query: 301 ttccacaggcttcctctttttcacctgtacctacttgctacatatcttcctctgtctcct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttccacaggcttcctctttttcacctgtacctacttgctacatatcttcctctgtctcct 560

                                                                       
Query: 361 cctcctcctcctcctctttcttcctcctctttctttctcctcttcttcctcctcctcctc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cctcctcctcctcctctttcttcctcctctttctttctcctcttcttcctcctcctcctc 620

                                                                       
Query: 421 ctcctcctctttcttcttcctcctcctctctctccttcatctttgtgcacagagtatcct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctcctcctctttcttcttcctcctcctctctctccttcatctttgtgcacagagtatcct 680

                                                                       
Query: 481 tgtgcaagagagctttcgagttaattctggcttgaattttgcaagcagtgttctgcctaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgtgcaagagagctttcgagttaattctggcttgaattttgcaagcagtgttctgcctaa 740

                                    
Query: 541 gatttatatacctttagcattctcc 565
           |||||||||||||||||||||||||
Sbjct: 741 gatttatatacctttagcattctcc 765


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 50
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 565
Length of database: 965
Length adjustment: 10
Effective length of query: 555
Effective length of database: 955
Effective search space:   530025
Effective search space used:   530025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)