BAC Information

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BAC

Clone NameMSMg01-122D15
ChromosomeY (Build37)
Map Location 2,566,502 - 2,567,199
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227
Downstream geneLOC667236, EG631479, LOC667244, LOC100039652
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-122D15.T7 (MSMg01no122_d15.b1)MSMg01-122D15.TJ (MSMg01no122_d15.g1)
ACCAG332141AG332142
length1,0811,121
length of high quality
(start - end)		723 (92 - 814)699 (91 - 789)
definitionCHROMAT_FILE: MSMg01no122_d15.b1 PHD_FILE: MSMg01no122_d15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:30:27 2005CHROMAT_FILE: MSMg01no122_d15.g1 PHD_FILE: MSMg01no122_d15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:30:27 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
CCATACTATNNNNNAATCAGTGGGCGCTAXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCAGCCAGTCTCATTTTCCTTTTATTCCCGCTGCTAAGA
CCACTAGTGTTCTCTGGTACTTTCAACCTTACTGATCTCCAGGCGACTAG
ACTTGTCAGGGTCAGAGTGGAAACTGGATATTTTACAACCAATTATCTGG
GCCACTTGCCTACCGCTGGTCACCTCAGTTTCTCTACCTAAATTCCTTAC
TGATAATTTCCTCAGCATGCAGCCTGCCATGATTCACAGACAGGTACAAC
AACTGCTTCTGCCTCAGTATTAAATTCAAGTCCTTTCTCTTCTTCAGGAA
TGTTAATATTTGACGATATACAAATGCATTTATCTGAGAAAGAATGGGCT
ATGCTAACCCATCGAAGAAGACACTCTACAGTGTTGTAATGCTGGTCATC
TACAAGCTAAACCACCTGTCTAGGTTAACTGATTAACTATAACTCATTTC
CTTTGTGTATACATTGTGTAACCTGGACTGTAATGGTGAAAAATACACCC
TGGGAGATATTACCTTTTGGGTTATAATTGATTTAGATTGCTTCTTCACT
GTTGAAGCAGGAACTGCTACAGAAAAAAAAAATTTCTATGTTATTTTTTT
TTGGGTTATTTGTTTTCTTTGTTTTTTAAAGATACAATTTCTCTGCATAA
CCCTGGCTGTCTTCAAGATCAATCTGTACAGCAGGTTTACCACAAACTCA
CCTGCCTTTGTCTCCCAAGTTCTGGGTTTAAAACATGCACCACCATCATC
CAGCTCAGTGTGAAAGTTCTTAATTTTAGTGAGGATCAATTATTTCTCTT
AGAATGAATATTTCTTCCATGANATCTAGAACTCTTAACTCTATTAATCA
TACATATACTCCAATTTTCCAATATCTTTTATTTTGTTCCTACATTAAGT
CCATGCCCCTTGTGAATTTATTTTACCTACCGGATTGAAGTTGGAAATTT
GAGGTGTGAAGCCTTACTCCTTTTTACCTATTTAAGTGGCCACTTGCTCC
TCGGGTGGAAACAAAACTTTTCCGCCCCAAT

NNCCAAGAATTNNNNAATAGATGTGAGGCTGGXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCACTTTAAGGCATACACCTAA
AAAAAAAAAAAAAGAAGAAGAACCTTAGGAAAAGAAAAGAAAAGAAAAGA
AAGCCCAGGATTTAACTTTAATCTAAATGGTCAGAAACCAGAAGGAGTCC
CACTAAAATCTGGGACTGGACAAGGCTGCCCACTTTCTCCCTACCAATTC
AATAGAGTACTTGAAATACTAGCCAGAGCAATTACACACATTTAAAAAAA
AAAAAAAACCAAAAACCGAAAACAGATGAATACAAATTGGAAAGGAAGAA
GTCAAAATTTCTCTATTTCCAGAAGATATGATAGCATGTATCTATGACCC
CAAAAATTACAACAGAGAAAAGCTAATCCTGATACACATTTTCAGCTTAG
GAGCTGAATTTAGAATTAATTTGAAGATAACAGTGGAATTTCTCTGCAGA
AAAGACAAATAGTATGAGAAAGAAATTAGGGAAAAACATGCTTCATAGTA
GTCACAAATAATATAAAATTCCTTGGTGTGACTCTGAGAAAGTGAAATAT
ATGTATGATAAACACTTCAAGTTTCTTCAAGAAAGAAGTCAAAGAAGATC
TCTGAAGATGGTAAAATCTCCCATGCTAATGATTTGGCAGTATTAATATA
GTAAAAATGGCTATCTTTCAAAAAGCAATCTGATATGCATTGCAATCACC
ATCAAAACTCCAACTCATTTCTTCACTGAGTTAGAAAGGGCAATTTGCAA
ATTCATCTTGAAAAAAAAACCTACTATATCCAAAACTATACTCAACAATA
GAAGAATGTCTTTTGTAATCACCCATGCCTGACCTCAAGCTGTACTACAG
AACAATTATGAAAAAAACTTAATGTACGGGAATAGGGTTAGACAGGGTAG
ATAATAGGAACAGAAACTGGAAGACGGAGAAAGTGAACCCCAAACTCATG
AAGGTNCCCTTGGAATCTTTTTACAAAGGGAAAAATAAAACCACCCCAGG
CGGGAAATAAAAAATGGGCCTTTTTTTCAAAAAAAAAGGGGGGCTTCGGC
TTCCAATCTGGGCAAATTTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no122_d15.b1 MSMg01no122_d15.b1 CHROMAT_FILE:
MSMg01no122_d15.b1 PHD_FILE: MSMg01no122_d15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:30:27 2005
         (723 letters)



>mm_chrY_2566497_2567622
          Length = 1126

 Score =  493 bits (255), Expect = e-143
 Identities = 597/737 (81%), Gaps = 67/737 (9%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgctaagaccactagtgttctctggtactttcaaccttactgatctccaggcgactaga 60
           ||||||||||| | |||| ||||| |||| |||  ||||||||||||||| || ||||||
Sbjct: 703 ctgctaagaccccaagtgatctctagtacattcggccttactgatctccaagcaactaga 644

                                                                       
Query: 61  cttgtcagggtcagagtggaaactggatattttacaaccaatt-atctgggccacttgcc 119
            ||| ||   ||||||||||||||||||||||||   ||| || | |||   ||||||| 
Sbjct: 643 tttggcaaaatcagagtggaaactggatattttatggccagttca-ctgatacacttgc- 586

                                                                       
Query: 120 taccgctggtcacctcagtttctctacctaaattccttactgataatttcctcagcatgc 179
                ||||||| ||||||||||| |||||||||| |||||||||||||| || ||||||
Sbjct: 585 -----ctggtcatctcagtttctccacctaaattctttactgataatttcttcggcatgc 531

                                                                       
Query: 180 agcc--tgccatgattcacagacagg---tacaacaactgcttctgc--ctcagtattaa 232
           ||||  | ||||||||||||| || |   |||||||   ||||||||  ||  ||| |||
Sbjct: 530 agcctatcccatgattcacaggcaagccctacaaca---gcttctgctgct--gtactaa 476

                                                                       
Query: 233 attcaagtcctttctcttcttcagga---atgttaatatttgacgatatacaaatgcatt 289
           ||| || ||| ||||||| |||||||   |  |||| |||| |  |||||||||||||||
Sbjct: 475 atttaaatccattctctttttcaggactta--ttaacatttcaaaatatacaaatgcatt 418

                                                                       
Query: 290 tatctgagaaagaatgggctatgct-aacccatcgaagaagacactctacagtgttgtaa 348
           | |||||| |||| |||||||| || ||||| ||  ||||||||||||||||||||||||
Sbjct: 417 tctctgaggaagattgggctatactgaacccttcccagaagacactctacagtgttgtaa 358

                                                                       
Query: 349 tgctggtcatctacaagctaaaccacctgtctaggttaactgattaacta-taactcatt 407
           |||||| |||||||||||| ||| || ||||||        ||| ||  | |||||| ||
Sbjct: 357 tgctggacatctacaagct-aactacatgtcta--------gataaa--agtaactcctt 309

                                                                       
Query: 408 tcctttgtgtatacattgtgtaacctggactgt----aatggtgaaaaatacaccctggg 463
           |||||||||||||||||||||||||||||||||    |    ||||||||| ||||||||
Sbjct: 308 tcctttgtgtatacattgtgtaacctggactgtgctca----tgaaaaatataccctggg 253

                                                                       
Query: 464 agatattaccttttgggttataattgatttagattgcttcttcactgttgaagcaggaac 523
           ||| ||| ||| |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 252 agaaattccctgttgggttataattgatttagattgcttcttcactgttgaatcaggaac 193

                                                                       
Query: 524 tgctacagaaaaaaaaaattt--ctatgttatttttt----tttgggttatttgttttct 577
           ||||||||||||| |   |||  ||||| ||||||||    ||| | || |||||||| |
Sbjct: 192 tgctacagaaaaata---tttttctatggtattttttggttttttgtttgtttgttttgt 136

                                                                       
Query: 578 ttgttttttaaagatacaatttctctg--cataaccctggctgtcttca--agatcaatc 633
           |||||||| || |||| ||||||||||  || |||  | ||||||  ||  |||||| ||
Sbjct: 135 ttgtttttcaa-gataaaatttctctgtgca-aac--ttgctgtc--cagaagatcactc 82

                                                                       
Query: 634 tgtacagcaggtttaccacaaactcacctgcctttgtc-tcccaagttctgggtttaaaa 692
           |||||| |||| | ||||||| || ||||||||||| | |||||||| ||||||||| ||
Sbjct: 81  tgtacaacaggctgaccacaaccttacctgcctttg-catcccaagtgctgggtttataa 23

                            
Query: 693 catgcaccaccatcatc 709
           |||||||||||| ||||
Sbjct: 22  catgcaccaccaccatc 6


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 723
Length of database: 1126
Length adjustment: 10
Effective length of query: 713
Effective length of database: 1116
Effective search space:   795708
Effective search space used:   795708
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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