BAC Information

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BAC

Clone NameMSMg01-128P13
ChromosomeY (Build37)
Map Location 2,791,342 - 2,791,533
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236, EG631479, LOC667244, LOC100039652
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-128P13.T7 (MSMg01no128_p13.b1)MSMg01-128P13.TJ (MSMg01no128_p13.g1)
ACCAG337106AG337107
length702704
length of high quality
(start - end)
316 (48 - 363)289 (72 - 360)
definitionCHROMAT_FILE: MSMg01no128_p13.b1 PHD_FILE: MSMg01no128_p13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:42:14 2005CHROMAT_FILE: MSMg01no128_p13.g1 PHD_FILE: MSMg01no128_p13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:42:14 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
AACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTCTATATGCCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAT
GCTGGCCTTGTACTCAGAAATCTGCCTACGTCTGCGTCCCAAGTGCTGGG
ATTAAAGCTGTGCACCACCAACACCCTGCAAATATTGCCATTTTTAGTGA
GATATTTTTAATGTTTTTTTTTACTGATTTATGTAAGATATTTCAAATGG
TGTGTCCATTTTTTTCACATTGTTGCATTATTCCTTTCAAAGTTTGTTGA
TTATTGCTCACAAAGACAGAATTTACCATCAAGACACTGACATTCTTCTT
TTTTCATTTCATTCCTCTCCTTCCCCTCTGCTTAACTTATCTGGAAATGG
ATTTTTCTGTATACCCCCACCAATTCTGGACCTTCTTGTGCAGTTCAGTC
CTGAATTCAAATCTACTGGATTTTATCACCAAATCCTGAGATTAAACCCC
TTTCTAAGCAGACATCAACATTTTTTTTAAATTTTCTGTCTCACAATACT
TCTTTAGAAGATGTCCTCATCACGGTTCCCAAGTAATGCCTTCAGACACT
TCTAACTTTCTGTAACAACCTTACCACATAGAGCCTATGTAAGGCATCCT
GTTGGGTAGCATTCTGCCTTAAGCTGTGCACATCCAAAGTGTTTGTATTC
TT
AATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTTGTTCAGTTCTGAGCCCCATTTTTTAA
TGGGGTTATTTGATTTTCTCGAAGTCCACCTTCTTGAGTTCTTTATATAT
GTTGGATATTAGTCCCCCTTTATTGAATTTCTGTACACCCACATACAACT
TCTGAAACATATTTTTATACTGCTCATATAATTTGTTGTTGATCATGTCC
CTGTAAAGTAAAGTAATGAAAGCAGTCAAATTTATACAAATAGGAAAAGA
ACGCTCAAAAAAATTAAATTGTTCTTTTCATACAATAAAAAGAAAAATAG
CAGTAAAAATATCTTCACATGCCAAGTAATTACAGATTTTTTTCCTAAGA
GATTATCAGAGACCCCCTATTTCATGTTTTAGATTTTCAAAATTAAAGTT
TACAGACAGATAAATAGATAGATAGATAGATAGATAGATAGATGATAGAT
AGATAGATAGATAGATAGATAGATAGATACATAGATAATCTTTTCTAGAA
AATTAATTGCATTTCAAAGTAGGGTTTTATTCTGTTCTACCAAATAGAAG
GTCTAATTTTTTTTCCTATAATGTCTCAGTTAAGACTTAGTGTATAACAA
TTCAATTATAATATACAAATTGCCTGTATATGTAACTGATTCTTTTCCAT
ACTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no128_p13.g1 MSMg01no128_p13.g1 CHROMAT_FILE:
MSMg01no128_p13.g1 PHD_FILE: MSMg01no128_p13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:42:14 2005
         (289 letters)



>mm_chrY_2791046_2791734
          Length = 689

 Score =  317 bits (164), Expect = 4e-91
 Identities = 185/192 (96%)
 Strand = Plus / Plus

                                                                       
Query: 97  ctttattgaatttctgtacacccacatacaacttctgaaacatatttttatactgctcat 156
           |||||||||||||||||| ||||||||||||||||| |||||||||||||||||| ||||
Sbjct: 297 ctttattgaatttctgtatacccacatacaacttctaaaacatatttttatactggtcat 356

                                                                       
Query: 157 ataatttgttgttgatcatgtccctgtaaagtaaagtaatgaaagcagtcaaatttatac 216
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 357 ataatttgttgttgatcatgtccctgtaaagcaaagtaatgaaagcagtcaaatttatac 416

                                                                       
Query: 217 aaataggaaaagaacgctcaaaaaaattaaattgttcttttcatacaataaaaagaaaaa 276
           |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| 
Sbjct: 417 aaataggaaaagaacgctcaaaaaaattaaattgttcttttcgtactataaaaagaaaac 476

                       
Query: 277 tagcagtaaaaa 288
           ||||||||||||
Sbjct: 477 tagcagtaaaaa 488


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)