BAC Information

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BAC

Clone NameMSMg01-132K16
ChromosomeY (Build37)
Map Location 1,385,226 - 1,385,856
singlet/doubletsinglet
Overlap geneZfy2
Upstream geneTspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278, EG667079, LOC667089, Rhoay-ps1
Downstream geneUbe1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-132K16.T7 (MSMg01no132_k16.b1)MSMg01-132K16.TJ (MSMg01no132_k16.g1)
ACCAG339847AG339848
length720701
length of high quality
(start - end)		526 (38 - 563)631 (71 - 701)
definitionCHROMAT_FILE: MSMg01no132_k16.b1 PHD_FILE: MSMg01no132_k16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:47:14 2005CHROMAT_FILE: MSMg01no132_k16.g1 PHD_FILE: MSMg01no132_k16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:47:15 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
AAATTTGCGGCGCTATACGACTCCTATAGTCAGAGATCCGCGGAATTCTC
TTTAGTTAGACATTAAAATGGATACTGAGCTTGCTTCTTGGGTCTATTTG
CTTGGAATATATATTTCAACCAATTTTGCTCTGTGATAATTTCTATATTG
ATGTCGAGGTATATTTCTTGGATGTAGCAAGATGATGGATTTAATAATTT
CTTTGACTAATATATTCATTTATTTTATCATTTCTTCAAAGCTTGAGATT
CTTTCATCTTTTCTATTCTGTTTGTGAAGTTTGCCTCTGTAATTCTGTTC
AAAATTCTGAATGTTTCATTTCCAGAATTCTCTCAGGTTTTATTTACTTA
TTCTATTTCCAAATTCACATCTTGAACACTTTTATTCTATTTTGCATCTT
GGATGCAGCAAAAAAAAAATGGATCCTATTTTCATATCCATTCTGTTAGT
CTATGTTATTTAATTGGGGAACTAAGACCACTGATATCGAGAAATATCAA
TGACCAATGATGGTTAATTCTTGTTAATTTTATCTTGTTGGTGGTGAGGT
GGGTGGAGTTGNTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNN

ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTATGTATTTTCTTATAAAGAATTTCATTA
TATTGCAAATGTAACAAGAGTAATAATTGGAAACCCCACTGCTAGAACTT
CATAAGTAATTTTTCATATGCAATTTTGGGACTGAGGATCAACTATATTC
CTGATGCTATCTCTTTTATAGGGGTGCATATGCATGAAAAGGTTGCAAAA
TTAATATGGGATAAACACAAAAGGACTTTAAAAATATCTAAACTATGGAA
GGGAATAGTAGGAGAATGACAAAATCTTGATACATGATCTAAGATTAAGA
CTGTGTAAAAGATTTTGTTATTGTACATCCATAATGAGGTAAGTACTGAG
CTATTTGTTGACAATGAAATGAGGAAATTTAGTATGGTAAGCAAACCTCC
TCTACTATCTGTATCATCCAACACAATCCATTCCACATTGCAAATATGTC
CACAATATAAAAATTACTACAGCTTGTGATTGTGAGAAGTTATGGCTTAT
CCTGCAAGAAATTTTTCAATGTAATTTCAATATTATGAATTTAAGCTGAT
TAGCCTAGATATGATGGGTATGTTCCGTCTCACAAGATGAACCTCAAAGT
ACAAACTTTCCACAGCTAATTTTAAAAAGATAATGCAAAAATCATAAAGA
T
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no132_k16.g1 MSMg01no132_k16.g1 CHROMAT_FILE:
MSMg01no132_k16.g1 PHD_FILE: MSMg01no132_k16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:47:15 2005
         (631 letters)



>mm_chrY_1385026_1386056
          Length = 1031

 Score = 1220 bits (631), Expect = 0.0
 Identities = 631/631 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttatgtattttcttataaagaatttcattatattgcaaatgtaacaagagtaataattgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttatgtattttcttataaagaatttcattatattgcaaatgtaacaagagtaataattgg 260

                                                                       
Query: 61  aaaccccactgctagaacttcataagtaatttttcatatgcaattttgggactgaggatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaccccactgctagaacttcataagtaatttttcatatgcaattttgggactgaggatc 320

                                                                       
Query: 121 aactatattcctgatgctatctcttttataggggtgcatatgcatgaaaaggttgcaaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aactatattcctgatgctatctcttttataggggtgcatatgcatgaaaaggttgcaaaa 380

                                                                       
Query: 181 ttaatatgggataaacacaaaaggactttaaaaatatctaaactatggaagggaatagta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttaatatgggataaacacaaaaggactttaaaaatatctaaactatggaagggaatagta 440

                                                                       
Query: 241 ggagaatgacaaaatcttgatacatgatctaagattaagactgtgtaaaagattttgtta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggagaatgacaaaatcttgatacatgatctaagattaagactgtgtaaaagattttgtta 500

                                                                       
Query: 301 ttgtacatccataatgaggtaagtactgagctatttgttgacaatgaaatgaggaaattt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttgtacatccataatgaggtaagtactgagctatttgttgacaatgaaatgaggaaattt 560

                                                                       
Query: 361 agtatggtaagcaaacctcctctactatctgtatcatccaacacaatccattccacattg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agtatggtaagcaaacctcctctactatctgtatcatccaacacaatccattccacattg 620

                                                                       
Query: 421 caaatatgtccacaatataaaaattactacagcttgtgattgtgagaagttatggcttat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 caaatatgtccacaatataaaaattactacagcttgtgattgtgagaagttatggcttat 680

                                                                       
Query: 481 cctgcaagaaatttttcaatgtaatttcaatattatgaatttaagctgattagcctagat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cctgcaagaaatttttcaatgtaatttcaatattatgaatttaagctgattagcctagat 740

                                                                       
Query: 541 atgatgggtatgttccgtctcacaagatgaacctcaaagtacaaactttccacagctaat 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 atgatgggtatgttccgtctcacaagatgaacctcaaagtacaaactttccacagctaat 800

                                          
Query: 601 tttaaaaagataatgcaaaaatcataaagat 631
           |||||||||||||||||||||||||||||||
Sbjct: 801 tttaaaaagataatgcaaaaatcataaagat 831


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 631
Length of database: 1031
Length adjustment: 10
Effective length of query: 621
Effective length of database: 1021
Effective search space:   634041
Effective search space used:   634041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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